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Brad Chapman edited this page Aug 26, 2013 · 7 revisions

These standalone versions require only Java and contain all other dependencies. Call commands exactly as you would from the examples using the source tree, but provide the jar file as input:

java -jar bcbio.variation-standalone.jar variant-prep your_variants.vcf GRCh37.fasta

See the releases page for the most recent downloads.

Older Releases

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