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Computational Biology Berlin

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  1. jannovar jannovar Public

    Annotation of VCF variants with functional impact and from databases (executable+library)

    Java 58 35

  2. Q Q Public

    Q ChIP-seq peak caller

    C++ 18 3

  3. ngspipeline ngspipeline Public

    Our NGS Pipeline using Nextflow

    7 3

  4. asdpex asdpex Public

    Java 7 2

  5. charite.github.io charite.github.io Public

    Charité Computational Biology Website

    CSS 6 8

  6. denovocaller denovocaller Public

    Denovo Variation Caller for simple familie trios (mother, father, affected child)

    Java 2

Repositories

Showing 10 of 13 repositories
  • jannovar Public

    Annotation of VCF variants with functional impact and from databases (executable+library)

    charite/jannovar’s past year of commit activity
    Java 58 35 32 (3 issues need help) 0 Updated Dec 16, 2024
  • Q Public

    Q ChIP-seq peak caller

    charite/Q’s past year of commit activity
    C++ 18 3 1 0 Updated Jul 17, 2024
  • asdpex Public
    charite/asdpex’s past year of commit activity
    Java 7 2 1 4 Updated Dec 2, 2022
  • charite.github.io Public

    Charité Computational Biology Website

    charite/charite.github.io’s past year of commit activity
    CSS 6 GPL-2.0 8 0 0 Updated Jan 15, 2019
  • hyperSMURF Public

    Weka implementation of hyperSMURF using EasyEnsemble and SMOTE

    charite/hyperSMURF’s past year of commit activity
    Java 2 GPL-3.0 4 0 0 Updated Dec 16, 2017
  • topodombar Public

    Phenotypic analysis of microdeletions and toplogical chromosome domain boundaries

    charite/topodombar’s past year of commit activity
    Python 1 BSD-2-Clause 4 0 0 Updated Nov 8, 2017
  • hyperSMURF-tutorial Public Forked from visze/hyperSMURF-tutorial

    Tutorial how you can the hyperSMURF algorithm in your Java application

    charite/hyperSMURF-tutorial’s past year of commit activity
    Java 0 1 0 0 Updated Apr 24, 2017
  • weka-GWAVA Public

    Weka implementation of the GWAVA method from Ritchie, G. R. S., Dunham, I., Zeggini, E., & Flicek, P. (2014). Functional annotation of noncoding sequence variants. Nat Methods, 11(3), 294–296. http://doi.org/10.1038/nmeth.2832

    charite/weka-GWAVA’s past year of commit activity
    Java 0 GPL-3.0 0 0 0 Updated Aug 16, 2016
  • chipseqknime Public

    KNIME workflow for ChIP-Seq http://charite.github.io/chipseqknime/

    charite/chipseqknime’s past year of commit activity
    CSS 0 0 0 0 Updated Mar 29, 2016
  • jannovar_tutorial Public archive

    Jannovar Tutorial Applications

    charite/jannovar_tutorial’s past year of commit activity
    Java 1 1 2 1 Updated May 27, 2015
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