Singularity image containing Freesurfer and HCP Conncectome Workbench

This Singularity image will be about 6GB when built using Singularity 2.4.2. It installs the latest development version of freesurfer and HCP Connectome Workbench

Build Singularity Image

• You will need to have at least singularity 2.4 installed. Simply clone this repository to a convenient directory.
• Navigate into the nklab-neuro-HCPdirectory and check that you have a Singularity definiton file Singularity and the directory src
• Confirm that src folder and all the files in src have full read and write privileges. if not then sudo chmod -R 777 src should accomplish this.
• Now simply build the image as sudo singularity build nklab-neuro-HCP.simg Singularity - note that the image name is assumed to be nklab-neuro-HCP.simg but this can be changed to a more convenient label.

Run Singularity Image

You can now run commands by simply appending them to the end of singularity run nklab-neuro-HCP.simg So for example to run wb_command simply enter singularity run nklab-neuro-tools.HCP wb_command ....