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Releases: chopdgd/bfx-tools-wdl

v1.9.1

27 Jul 20:50
@weixuanfu weixuanfu
v1.9.1
1831411
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v1.9.1 Pre-release
Pre-release
  • support WESRE with new petagegne software in new HPC
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v1.9.0 Release

23 Jun 19:58
@jaredgk jaredgk
v1.9.0
da9da62
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v1.9.0 Release Latest
Latest
  • Remove default queues from Unix utils
  • Update some GATK tools to run with GATK 4.2
  • Use Singularity images for Pindel, Scalpel, Star-Fusion, and RSEM and more
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v1.8.0 release

02 Feb 16:34
@weixuanfu weixuanfu
v1.8.0
043e1aa
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v1.8.0 release
  • upgrade tools for new pipelines
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Add support to python 3

19 Apr 16:46
@weixuanfu weixuanfu
v1.7.0
c3de27f
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Add support to python 3
  • add support to build python 3 environment by default.
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Add setkey option in gatk to avoid overwrite set from slivar

21 Sep 16:22
@weixuanfu weixuanfu
v1.6.3
8ab6416
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Add setkey option in gatk to avoid overwrite set from slivar
  • Add setkey option in gatk to avoid overwrite set from slivar #168
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Support petagene

23 Jul 15:08
@weixuanfu weixuanfu
v1.6.2
c6ac24a
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Support petagene
  • add support for petagene compressed fastq.gz file (#167 )
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Add rsync and md5sum

13 Jul 23:02
@weixuanfu weixuanfu
v1.6.1
c94ab61
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Add rsync and md5sum
  • Add rsync and md5sum to support finalization step in our pipeline
Assets 2
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2021 spring release

20 Apr 17:17
@weixuanfu weixuanfu
v1.6.0
930f386
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2021 spring release
  • update and novoalign version and its parameters.
Assets 2
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Slurm Config and queue update

14 Apr 14:35
@Tayazseven Tayazseven
v1.5.1
2049801
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Slurm Config and queue update
  • Slurm Config and queue update
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EXOME CNV and MITO Changes

28 Aug 14:32
@Tayazseven Tayazseven
v1.5.0
e5e49c9
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EXOME CNV and MITO Changes
  • New CNV tasks - Mosdepth
  • New BCFTools Sort
  • Unix commands - awk
Assets 2
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