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164 extend visualization support for lotka volterra and ensembles #208

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164 extend visualization support for lotka volterra and ensembles #208

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35d521e
Trajectory distribution schema
JosephCottam Jun 20, 2023
2fbedfb
Sample trajectory data and notebook
JosephCottam Jun 20, 2023
04ac466
Interactive legend
JosephCottam Jun 20, 2023
cdc597d
Removing extraneous encoding
JosephCottam Jun 20, 2023
ce5f27d
replace-by-name utility added
JosephCottam Jun 20, 2023
0b0c788
Types improvements and linting fixes
JosephCottam Jun 20, 2023
6e1df64
Relabeling
JosephCottam Jun 20, 2023
70dc20b
Example trajectories working
JosephCottam Jun 20, 2023
a4e1c27
calibration viz notebook
marjoleinpnnl Jun 20, 2023
358b4ce
clean up
marjoleinpnnl Jun 20, 2023
f876862
heatmap vega
marjoleinpnnl Jun 26, 2023
19eb3e1
triangle plot in triangle_vega_demo
marjoleinpnnl Jun 26, 2023
4403027
Points and tracks on trajectory visualization.
JosephCottam Jul 5, 2023
2cb1ada
Ignoring typechecking temporaries
JosephCottam Jul 5, 2023
39f074e
Adjusting z-order
JosephCottam Jul 5, 2023
2808aee
EXPERIEMENT: dataframe based input to trajectory visualizations
JosephCottam Jul 6, 2023
71efd2d
REVERTING to prep for a TA4-defined dataframe.
JosephCottam Jul 6, 2023
ab368d9
Ignoring temporaries that start with an underscore.
JosephCottam Jul 6, 2023
f4857d6
Joining line for provided datapoints.
JosephCottam Jul 6, 2023
38925ba
Color control.
JosephCottam Jul 6, 2023
8289ab8
Merge branch 'main' into 164-extend-visualization-support-for-lotka-v…
JosephCottam Jul 6, 2023
566b376
TA4 dataframe: Distributions and points working
JosephCottam Jul 6, 2023
e3d97c0
Distributions, traces and points all work from TA4 interface dataframe.
JosephCottam Jul 6, 2023
30bce13
Improved Color handling
JosephCottam Jul 6, 2023
feffe82
triangle notebook
marjoleinpnnl Jul 7, 2023
5912f8d
vega with n-dimensional heatmap
marjoleinpnnl Jul 8, 2023
019fc93
vega with n-dimensional heatmap
marjoleinpnnl Jul 8, 2023
83ab484
Basic timepoint markers added
JosephCottam Jul 6, 2023
27b71b0
Permanantly labeled timepoint markers.
JosephCottam Jul 6, 2023
ecce4b0
Support to NOT join points
JosephCottam Jul 6, 2023
2f86e95
More flexible timepoint for traces.
JosephCottam Jul 7, 2023
279176d
LotkaVolterra examples
JosephCottam Jul 7, 2023
20d0d17
Trajectory and barycenter/proababilty-density plots
JosephCottam Jul 8, 2023
0d93ece
Basic support for calibrate chart
JosephCottam Jul 10, 2023
ffdded3
Calibration supports name-discovery from the dataset.
JosephCottam Jul 10, 2023
9bae026
Provisional support for time_unit in TA4 interface dataframe
JosephCottam Jul 10, 2023
b71b609
Merge branch 'main' into 164-extend-visualization-support-for-lotka-v…
JosephCottam Jul 10, 2023
2a59ad1
Merge branch '220-extend-ta4-dataframe-format-with-timestamp' into 16…
JosephCottam Jul 10, 2023
4297984
Missed format identifier
JosephCottam Jul 10, 2023
7516320
Updated TA4 dataframe interface.
JosephCottam Jul 11, 2023
552a010
Merge branch '220-extend-ta4-dataframe-format-with-timestamp' into 16…
JosephCottam Jul 11, 2023
8231efb
Using 'Optional' for types instead of Union with None
JosephCottam Jul 11, 2023
bff19b1
Visualzation of non-ensembles supported.
JosephCottam Jul 11, 2023
e812cae
Demo of visulaizations through the interface.
JosephCottam Jul 11, 2023
0913adc
Default time-unit
JosephCottam Jul 11, 2023
d71a96a
Testing time_unit behaviors
JosephCottam Jul 11, 2023
4d1f2e7
Merge branch '220-extend-ta4-dataframe-format-with-timestamp' into 16…
JosephCottam Jul 11, 2023
5efa4ee
Updating tests for new TA4 itnerface behavior
JosephCottam Jul 11, 2023
0d8a3f4
Merge branch 'main' into 220-extend-ta4-dataframe-format-with-timestamp
JosephCottam Jul 11, 2023
9fabc94
Merge branch 'main' into 220-extend-ta4-dataframe-format-with-timestamp
JosephCottam Jul 12, 2023
c3e3904
To preserve context in failure messages, changed to
JosephCottam Jul 12, 2023
2c01dad
Merge branch '220-extend-ta4-dataframe-format-with-timestamp' into 16…
JosephCottam Jul 12, 2023
3cdb311
Tests for visualizations; Visuals avaialble through the TA4 interface.
JosephCottam Jul 12, 2023
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1 change: 1 addition & 0 deletions .gitignore
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Expand Up @@ -326,6 +326,7 @@ scratch/
*__pycache__*
*.vscode
*.ipynb_checkpoints*
*.mypy_cache*
*.DS_Store
*.egg-info
venv/
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1 change: 1 addition & 0 deletions notebook/.gitignore
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_*
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