Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Added notebook for hierarchical sir model and AMR #620

Draft
wants to merge 15 commits into
base: main
Choose a base branch
from
Draft

Added notebook for hierarchical sir model and AMR #620

wants to merge 15 commits into from

Conversation

djinnome
Copy link
Contributor

@djinnome djinnome commented Oct 21, 2024 •
edited
Loading

  • Create dependency tests
  • Generate dependency tree of hierarchical parameters
  • Topologically sort dependency tree
  • Compile parameters in topologically sorted order
  • Confirm that dependency tests pass

@djinnome djinnome linked an issue Oct 21, 2024 that may be closed by this pull request
Multi-level modeling support from AMRs #614
Open
@review-notebook-app Review Notebook App
Copy link

Check out this pull request on  ReviewNB

See visual diffs & provide feedback on Jupyter Notebooks.

Powered by ReviewNB

djinnome added 14 commits October 21, 2024 13:19
@djinnome
Added hierarchical fixtures and test for compilation of hierarchical …
c9ed407 
…paramteers
@djinnome
Created tests and notebook examples to topologically sort model param…
9d41e6a 
…eters by distribution parameter dependencies
@djinnome
Added cyclic and acylic json models
5934f02
@djinnome
get_mira_dependencies -> sort_mira_dependencies
2704ae1
@djinnome
Cleaned up sort_mira_dependencies
ce4ba9b
@djinnome
Cleaned up sort_mira_dependencies
2187a8b
@djinnome
Lint
a87e243
@djinnome
Lint
bab0444
@djinnome
Getting more interesting compilation errors now
5330423
@djinnome
Beta distribution in latest version of pyro requires concentration1 f…
e48ff2f 
…or alpha and concentration0 for beta
@djinnome
Sampling from a pyro distribution is as simple as dist.sample()
6a39869
@djinnome
test_hierarchical passes, but nothing else passes
2e47acc
@djinnome
param_info is a Parameter, and this is not expected by get_name
e6fa616
@djinnome
Added def instead of lambda function. Still getting recursive call
2823e7c
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Reviewers
No reviews
Assignees
No one assigned
Labels
None yet
Projects
None yet
Milestone
No milestone
Development

Successfully merging this pull request may close these issues.

Multi-level modeling support from AMRs
1 participant
@djinnome