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Added Create_visit_label option so that you don't get any MRICandidateMi... #2

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Added Create_visit_label option so that you don't get any MRICandidateMi... #2

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5 changes: 3 additions & 2 deletions uploadNeuroDB/NeuroDB/MRI.pm
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Original file line number Diff line number Diff line change
Expand Up @@ -87,14 +87,15 @@ B<subjectIDIsValid( C<$CandID>, C<$PSCID>, C<$dbhr> )>
Returns: 1 if the ID pair matches, 0 otherwise
=cut
sub subjectIDIsValid {
my ($candID, $pscid, $visit_label, $dbhr, $check_visit_label) = @_;
my ($candID, $pscid, $visit_label, $dbhr, $create_visit_label) = @_;
my $query = "SELECT COUNT(*) AS isValid FROM candidate WHERE CandID=".$${dbhr}->quote($candID)." AND PSCID=".$${dbhr}->quote($pscid);
my $sth = $${dbhr}->prepare($query);
$sth->execute();

my $rowhr = $sth->fetchrow_hashref();

if (($rowhr->{'isValid'} == 1) && $check_visit_label) {
# Check that visit label exists in the database if don't want to create visit labels via imaging pipeline
if (($rowhr->{'isValid'} == 1) && ($create_visit_label eq "no")) {
$query = "SELECT COUNT(*) AS isValid FROM Visit_Windows WHERE BINARY Visit_label=".$${dbhr}->quote($visit_label);
$sth = $${dbhr}->prepare($query);
$sth->execute();
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4 changes: 3 additions & 1 deletion uploadNeuroDB/NeuroDB/MRIProcessingUtility.pm
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Expand Up @@ -1048,10 +1048,12 @@ sub validateCandidate {
$query = "SELECT Visit_label FROM Visit_Windows WHERE BINARY Visit_label=?";
$sth = ${$this->{'dbhr'}}->prepare($query);
$sth->execute($subjectIDsref->{'visitLabel'});
if ($sth->rows == 0) {
if (($sth->rows == 0) && ($subjectIDsref->{'createVisitLabel'} eq "no") {
print LOG "\n\n => No Visit label";
$CandMismatchError= 'Visit label does not exist';
return $CandMismatchError;
} elsif (($sth->rows == 0) && ($subjectIDsref->{'createVisitLabel'} eq "yes")) {
print LOG "\n\n => Will create visit label $subjectIDsref->{'visitLabel'}";
}

return $CandMismatchError;
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