Release Delphi Epidata 4.1.10

.bumpversion.cfg

@@ -1,5 +1,5 @@
 [bumpversion]
-current_version = 4.1.9
+current_version = 4.1.10
 commit = False
 tag = False
 

.github/workflows/ci.yaml

@@ -75,7 +75,7 @@ jobs:
 
       - name: Start delphi_web_epidata
         run: |
-          docker run --rm -d -p 10080:80 --env "MODULE_NAME=delphi.epidata.server.main" --env "SQLALCHEMY_DATABASE_URI=mysql+mysqldb://user:pass@delphi_database_epidata:3306/epidata" --env "FLASK_SECRET=abc" --env "FLASK_PREFIX=/epidata" --env "REDIS_HOST=delphi_redis" --env "REDIS_PASSWORD=1234" --env "API_KEY_REGISTER_WEBHOOK_TOKEN=abc" --env "API_KEY_ADMIN_PASSWORD=test_admin_password" --network delphi-net --name delphi_web_epidata delphi_web_epidata
+          docker run --rm -d -p 10080:80 --env "MODULE_NAME=delphi.epidata.server.main" --env "SQLALCHEMY_DATABASE_URI=mysql+mysqldb://user:pass@delphi_database_epidata:3306/epidata" --env "FLASK_SECRET=abc" --env "FLASK_PREFIX=/epidata" --env "REDIS_HOST=delphi_redis" --env "REDIS_PASSWORD=1234" --env "API_KEY_REGISTER_WEBHOOK_TOKEN=abc" --env "API_KEY_ADMIN_PASSWORD=test_admin_password" --env "TESTING_MODE=True" --network delphi-net --name delphi_web_epidata delphi_web_epidata
           docker ps
 
       - name: Run Unit Tests
@@ -101,7 +101,7 @@ jobs:
         uses: actions/checkout@v2
       - uses: actions/setup-node@v2
         with:
-          node-version: '14.x'
+          node-version: '16.x'
       - name: Cache Node.js modules
         uses: actions/cache@v2
         with:

.github/workflows/performance-tests.yml

@@ -14,7 +14,8 @@ jobs:
   run-perftests:
     # Make sure 1. this is a PR, not an issue 2. it contains "/run performance test" anywhere in the body
     if: github.event.issue.pull_request && contains(github.event.comment.body, '/run performance test')
-    runs-on: ubuntu-latest
+    # Run this on Delphi's self-hosted runner
+    runs-on: self-hosted
     outputs:
       request_count: ${{ steps.output.outputs.request_count }}
       failure_count: ${{ steps.output.outputs.failure_count }}

.github/workflows/release-helper.yml

@@ -95,7 +95,7 @@ jobs:
         uses: actions/checkout@v2
       - uses: actions/setup-node@v2
         with:
-          node-version: '14.x'
+          node-version: '16.x'
       - name: Cache Node.js modules
         uses: actions/cache@v2
         with:

dev/local/Makefile

@@ -104,6 +104,7 @@ web:
 		--env "REDIS_PASSWORD=1234" \
 		--env "API_KEY_ADMIN_PASSWORD=test_admin_password" \
 		--env "API_KEY_REGISTER_WEBHOOK_TOKEN=abc" \
+		--env "TESTING_MODE=True" \
 		--network delphi-net --name delphi_web_epidata \
 		delphi_web_epidata >$(LOG_WEB) 2>&1 &
 

dev/local/setup.cfg

@@ -1,6 +1,6 @@
 [metadata]
 name = Delphi Development
-version = 4.1.9
+version = 4.1.10
 
 [options]
 packages =

docs/api/fluview.md

@@ -18,7 +18,7 @@ General topics not specific to any particular endpoint are discussed in the
 Influenza-like illness (ILI) from U.S. Outpatient Influenza-like Illness Surveillance Network (ILINet).
  - Data source: [United States Centers for Disease Control and Prevention](http://gis.cdc.gov/grasp/fluview/fluportaldashboard.html) (CDC)
  - Temporal Resolution: Weekly* from 1997w40
- - Spatial Resolution: National, [HHS regions](http://www.hhs.gov/iea/regional/), [Census divisions](http://www.census.gov/econ/census/help/geography/regions_and_divisions.html), most States and Territories, and some Cities (full list [here](https://github.com/cmu-delphi/delphi-epidata/blob/main/src/acquisition/fluview/fluview_locations.py))
+ - Spatial Resolution: National, [HHS regions](https://www.hhs.gov/about/agencies/iea/regional-offices/index.html), [Census divisions](https://www2.census.gov/geo/pdfs/maps-data/maps/reference/us_regdiv.pdf), most States and Territories, and some Cities (full list [here](https://github.com/cmu-delphi/delphi-epidata/blob/main/src/acquisition/fluview/fluview_locations.py))
  - Open access
 
 \* Data is usually released on Friday

integrations/acquisition/covidcast/test_covidcast_meta_caching.py

@@ -58,6 +58,19 @@ def setUp(self):
     secrets.db.host = 'delphi_database_epidata'
     secrets.db.epi = ('user', 'pass')
 
+    epidata_cnx = mysql.connector.connect(
+        user='user',
+        password='pass',
+        host='delphi_database_epidata',
+        database='epidata')
+    epidata_cur = epidata_cnx.cursor()
+
+    epidata_cur.execute("DELETE FROM `api_user`")
+    epidata_cur.execute('INSERT INTO `api_user`(`api_key`, `email`) VALUES("key", "email")')
+    epidata_cnx.commit()
+    epidata_cur.close()
+    epidata_cnx.close()
+
     # use the local instance of the Epidata API
     Epidata.BASE_URL = BASE_URL
     Epidata.auth = ('epidata', 'key')

integrations/acquisition/covidcast/test_csv_uploading.py

@@ -55,6 +55,19 @@ def setUp(self):
     secrets.db.host = 'delphi_database_epidata'
     secrets.db.epi = ('user', 'pass')
 
+    epidata_cnx = mysql.connector.connect(
+        user='user',
+        password='pass',
+        host='delphi_database_epidata',
+        database='epidata')
+    epidata_cur = epidata_cnx.cursor()
+
+    epidata_cur.execute("DELETE FROM `api_user`")
+    epidata_cur.execute('INSERT INTO `api_user`(`api_key`, `email`) VALUES("key", "email")')
+    epidata_cnx.commit()
+    epidata_cur.close()
+    epidata_cnx.close()
+
     # use the local instance of the Epidata API
     Epidata.BASE_URL = 'http://delphi_web_epidata/epidata/api.php'
     Epidata.auth = ('epidata', 'key')