Neat 318 add query module to graph

[nikokaoja]

[0.82.00] - 21-06-24

Added

• Introduce query module under neat.graph which holds previous _Queries class
• Added generation of SPARQL CONSTRUCT queries based on rdfpath transformations defined in InformationRules
• Introduce NeatGraphStore.read method which takes class and returns all instances of that class
• Test for NeatGraphStore.read method which entails end-to-end process of loading triples, inferring data model and reading instances of a class

Changed

• DMSLoader now uses .read method of NeatGraphStore

[github-actions]

☂️ Python Coverage

current status: ✅

Overall Coverage

Lines	Covered	Coverage	Threshold	Status
21743	15360	71%	60%	🟢

New Files

File	Coverage	Status
cognite/neat/graph/queries/init.py	100%	🟢
cognite/neat/graph/queries/_base.py	61%	🟢
cognite/neat/graph/queries/_construct.py	83%	🟢
cognite/neat/graph/queries/_shared.py	42%	🟢
TOTAL	71%	🟢

Modified Files

File	Coverage	Status
cognite/neat/_version.py	100%	🟢
cognite/neat/graph/extractors/_mock_graph_generator.py	19%	🟢
cognite/neat/graph/loaders/_rdf2dms.py	74%	🟢
cognite/neat/graph/stores/_base.py	68%	🟢
cognite/neat/rules/analysis/_information_rules.py	84%	🟢
cognite/neat/rules/importers/_inference2rules.py	91%	🟢
cognite/neat/rules/models/information/_rules.py	86%	🟢
cognite/neat/rules/models/information/_rules_input.py	96%	🟢
cognite/neat/utils/utils.py	83%	🟢
TOTAL	78%	🟢

updated for commit: 5507ac2 by action🐍

[doctrino]

If I understand this PR correctly, this is mainly moving code around, it is not much new.

The only thing that reacted to, should the queries package be inside the store? As it is mostly a helper, and not a core concept, like extractors, store, loader, or transformer