more type fixes #1010
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| name: Continuous integration tests | |
| on: | |
| push: | |
| branches: [ main ] | |
| pull_request: | |
| branches: [ main ] | |
| concurrency: | |
| group: build-${{ github.event.pull_request.number || github.ref }} | |
| cancel-in-progress: true | |
| jobs: | |
| tox: | |
| name: CI tests via Tox | |
| runs-on: ubuntu-24.04 | |
| strategy: | |
| matrix: | |
| py-ver-major: [3] | |
| py-ver-minor: [9, 10, 11, 12, 13] | |
| step: [lint, unit, bandit, mypy] | |
| env: | |
| py-semver: ${{ format('{0}.{1}', matrix.py-ver-major, matrix.py-ver-minor) }} | |
| TOXENV: ${{ format('py{0}{1}-{2}', matrix.py-ver-major, matrix.py-ver-minor, matrix.step) }} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 | |
| - name: Set up Singularity | |
| if: ${{ matrix.step == 'unit' || matrix.step == 'mypy' }} | |
| run: | | |
| wget --no-verbose https://github.com/sylabs/singularity/releases/download/v4.2.1/singularity-ce_4.2.1-noble_amd64.deb | |
| sudo apt-get install -y ./singularity-ce_4.2.1-noble_amd64.deb | |
| - name: Set up Python | |
| uses: actions/setup-python@v5 | |
| with: | |
| allow-prereleases: true | |
| python-version: ${{ env.py-semver }} | |
| cache: pip | |
| cache-dependency-path: | | |
| requirements.txt | |
| tox.ini | |
| - name: Upgrade setuptools and install tox | |
| run: | | |
| pip install -U pip setuptools wheel | |
| pip install "tox<4" "tox-gh-actions<3" | |
| - name: MyPy cache | |
| if: ${{ matrix.step == 'mypy' }} | |
| uses: actions/cache@v4 | |
| with: | |
| path: .mypy_cache/${{ env.py-semver }} | |
| key: mypy-${{ env.py-semver }} | |
| - name: Test with tox | |
| run: tox | |
| - name: Upload coverage to Codecov | |
| if: ${{ matrix.step == 'unit' }} | |
| uses: codecov/codecov-action@v5.1.2 | |
| env: | |
| CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }} | |
| with: | |
| fail_ci_if_error: true | |
| tox-style: | |
| name: CI linters via Tox | |
| runs-on: ubuntu-24.04 | |
| strategy: | |
| matrix: | |
| step: [lint-readme, pydocstyle] | |
| env: | |
| py-semver: "3.12" | |
| TOXENV: ${{ format('py312-{0}', matrix.step) }} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 | |
| - name: Set up Python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ env.py-semver }} | |
| cache: pip | |
| - name: Upgrade setuptools and install tox | |
| run: | | |
| pip install -U pip setuptools wheel | |
| pip install "tox<4" "tox-gh-actions<3" | |
| - if: ${{ matrix.step == 'pydocstyle' && github.event_name == 'pull_request'}} | |
| name: Create local branch for diff-quality for PRs | |
| run: git branch ${{github.base_ref}} origin/${{github.base_ref}} | |
| - name: Test with tox | |
| run: tox | |
| release_test: | |
| name: cwl-utils release test | |
| runs-on: ubuntu-24.04 | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Singularity | |
| run: | | |
| wget --no-verbose https://github.com/sylabs/singularity/releases/download/v3.10.4/singularity-ce_3.10.4-jammy_amd64.deb | |
| sudo apt-get install -y ./singularity-ce_3.10.4-jammy_amd64.deb | |
| - name: pull some containers | |
| run: | | |
| export CWL_SINGULARITY_CACHE=$GITHUB_WORKSPACE/singularity_cache | |
| mkdir -p "${CWL_SINGULARITY_CACHE}" | |
| singularity pull --name "${CWL_SINGULARITY_CACHE}/node_alpine.sif" docker://docker.io/node:alpine | |
| ls -lh "${CWL_SINGULARITY_CACHE}" | |
| echo "${CWL_SINGULARITY_CACHE}" | |
| echo "CWL_SINGULARITY_CACHE=${CWL_SINGULARITY_CACHE}" >> "$GITHUB_ENV" | |
| - name: Set up Python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: 3.12 | |
| cache: pip | |
| cache-dependency-path: | | |
| requirements.txt | |
| test-requirements.txt | |
| - name: Install packages | |
| run: | | |
| pip install -U pip setuptools wheel | |
| pip install virtualenv | |
| - name: Release test | |
| env: | |
| RELEASE_SKIP: head | |
| run: ./release-test.sh |