fixing site build?

Author: mr-c

draft-4/draft-4/cat3-tool-mediumcut.cwl

@@ -0,0 +1,18 @@
+#!/usr/bin/env cwl-runner
+class: CommandLineTool
+cwlVersion: cwl:draft-4.dev2
+description: "Print the contents of a file to stdout using 'cat' running in a docker container."
+hints:
+  DockerRequirement:
+    dockerPull: debian:wheezy
+inputs:
+  file1:
+    type: File
+    label: Input File
+    description: "The file that will be copied using 'cat'"
+    inputBinding: {position: 1}
+outputs:
+  output_file:
+    type: stdout
+baseCommand: cat
+stdout: cat-out

draft-4/draft-4/cat3-tool-shortcut.cwl

@@ -0,0 +1,17 @@
+#!/usr/bin/env cwl-runner
+class: CommandLineTool
+cwlVersion: cwl:draft-4.dev2
+description: "Print the contents of a file to stdout using 'cat' running in a docker container."
+hints:
+  DockerRequirement:
+    dockerPull: debian:wheezy
+inputs:
+  file1:
+    type: File
+    label: Input File
+    description: "The file that will be copied using 'cat'"
+    inputBinding: {position: 1}
+outputs:
+  output_file:
+    type: stdout
+baseCommand: cat

draft-4/draft-4/egrep-stderr-mediumcut.cwl

@@ -0,0 +1,18 @@
+#!/usr/bin/env cwl-runner
+class: CommandLineTool
+cwlVersion: cwl:draft-4.dev2
+description: "Test of capturing stderr output in a docker container."
+hints:
+  DockerRequirement:
+    dockerPull: debian:wheezy
+
+inputs: []
+
+outputs:
+  output_file:
+    type: stderr
+
+baseCommand: egrep
+successCodes: [2]
+
+stderr: std.err

draft-4/draft-4/egrep-stderr-shortcut.cwl

@@ -0,0 +1,16 @@
+#!/usr/bin/env cwl-runner
+class: CommandLineTool
+cwlVersion: cwl:draft-4.dev2
+description: "Test of capturing stderr output in a docker container."
+hints:
+  DockerRequirement:
+    dockerPull: debian:wheezy
+
+inputs: []
+
+outputs:
+  output_file:
+    type: stderr
+
+baseCommand: egrep
+successCodes: [2]

draft-4/draft-4/egrep-stderr.cwl

@@ -0,0 +1,15 @@
+#!/usr/bin/env cwl-runner
+class: CommandLineTool
+cwlVersion: cwl:draft-4.dev2
+description: "Test of capturing stderr output in a docker container."
+hints:
+  DockerRequirement:
+    dockerPull: debian:wheezy
+inputs: []
+outputs:
+  output_file:
+    type: File
+    outputBinding: {glob: error.txt}
+baseCommand: egrep
+successCodes: [2]
+stderr: error.txt

site/draft4-deps.json

@@ -11,6 +11,10 @@
             "path": "../draft-4/salad/schema_salad/metaschema/metaschema.yml",
             "class": "File"
         },
+        {
+            "path": "../draft-4/salad/schema_salad/metaschema/metaschema_base.yml",
+            "class": "File"
+        },
         {
             "path": "../draft-4/salad/schema_salad/metaschema/salad.md",
             "class": "File"