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Issues list

recommend DOCKER_DEFAULT_PLATFORM for macos users
#2056 opened Oct 19, 2024 by mr-c
Running cwltool with empty inputs_object fails without a meaningful error message
#2043 opened Sep 20, 2024 by WhiteGobo
Selected input parameter type is not propagated as output parameter type
#2039 opened Sep 9, 2024 by adrabent
Input format expression not considering $namespaces
#2033 opened Aug 23, 2024 by fmigneault
2
cwltool Freezes When Not Using Inputs in Scatter Parallelization
#2031 opened Aug 8, 2024 by gen740
cwltool --print-dot fails with python 3.8 (or newer) due pydot version 3.0.0 (or newer)
#2027 opened Jul 28, 2024 by jmfernandez
dev docs: how to run the conformance tests with pytest
#2023 opened Jul 18, 2024 by mr-c
Confusing provenance model (wasStartedBy/qualifiedStart/wasEndedBy/qualifiedEnd)
#2007 opened Jun 3, 2024 by avillar
--debug should print the URL of the downloading schema
#2000 opened May 14, 2024 by inutano
Evaluation expressions that timeout can raise JSONDecodeError
#1999 opened May 13, 2024 by brettcs
CWL Conditionals, when component doesn't handle condition when tool input parameter is a non-optional file with loadContents set to true
#1969 opened Jan 21, 2024 by alexiswl
2
Add CITATION.cff / codemeta.json file
#1967 opened Jan 16, 2024 by mr-c
installing for regular users: use pipx
#1946 opened Nov 24, 2023 by mr-c
cwltool --validate is success --make-template becomes failure
#1944 opened Nov 15, 2023 by manabuishii
cwltool --pack does not handle collisions correctly
#1937 opened Nov 6, 2023 by mvdbeek
2
switch from setuptools to hatchling?
#1935 opened Oct 24, 2023 by mr-c
1
regression of cwltool performance by 5-7 minutes around 1st of june
#1916 opened Sep 29, 2023 by azat-badretdin
9
shutil.rmtree fails in M2 mac
#1913 opened Sep 27, 2023 by naga-onu
3
cwltool throws an error when secondaryFiles are specified as a list in a workflow and as a single element in a tool
#1912 opened Sep 22, 2023 by ThomasHickman
Schema salad error validating CWL enum definitions
#1908 opened Sep 15, 2023 by fmigneault
2
Cannot load CWL definition directly with Python objects using Factory class
#1903 opened Sep 12, 2023 by fmigneault
if the user's tmp drive is full, provide a better error message enhancement good first issue help wanted
#1899 opened Sep 5, 2023 by mr-c
Provenance capture of all information in input yaml file enhancement
#1889 opened Aug 17, 2023 by jjkoehorst
@mr-c
bind source path does not exist - cwltool keeps waiting / running does not stop
#1887 opened Aug 17, 2023 by jjkoehorst
2
Download progress from input files through yaml enhancement good first issue
#1886 opened Aug 17, 2023 by jjkoehorst
ProTip! Exclude everything labeled bug with -label:bug.