Add initial conformance tests for input and output of directory objects.

Author: Peter Amstutz

draft-4/conformance_test_draft-4.yaml

@@ -647,3 +647,50 @@
   }
   tool: "draft-4/conflict-wf.cwl#collision"
   doc: Test workflow two input files with same name.
+
+- job: draft-4/dir-job.yml
+  output:
+    "outlist": {
+        "size": 20,
+        "path": "output.txt",
+        "checksum": "sha1$13cda8661796ae241da3a18668fb552161a72592",
+        "class": "File"
+    }
+  tool: draft-4/dir.cwl
+  doc: Test directory input
+
+- job: draft-4/dir-job.yml
+  output:
+    "outlist": {
+        "size": 20,
+        "path": "output.txt",
+        "checksum": "sha1$13cda8661796ae241da3a18668fb552161a72592",
+        "class": "File"
+    }
+  tool: draft-4/dir2.cwl
+  doc: Test directory input in Docker
+
+- job: draft-4/dir3-job.yml
+  output:
+    "outdir": {
+        "class": "Directory",
+        "hostfs": true,
+        "listing": [
+            {
+                "basename": "hello.txt",
+                "entry": {
+                    "class": "File",
+                    "path": "hello.txt"
+                }
+            },
+            {
+                "basename": "goodbye.txt",
+                "entry": {
+                    "class": "File",
+                    "path": "goodbye.txt"
+                }
+            }
+        ],
+    }
+  tool: draft-4/dir3.cwl
+  doc: Test directory input in Docker

draft-4/draft-4/dir-job.yml

@@ -0,0 +1,3 @@
+indir:
+  class: Directory
+  path: testdir

draft-4/draft-4/dir.cwl

@@ -0,0 +1,18 @@
+class: CommandLineTool
+cwlVersion: draft-4.dev2
+requirements:
+  - class: ShellCommandRequirement
+inputs:
+  indir: Directory
+outputs:
+  outlist:
+    type: File
+    outputBinding:
+      glob: output.txt
+baseCommand: []
+arguments: ["cd", "$(inputs.indir.path)",
+  {shellQuote: false, valueFrom: "&&"},
+  "find", ".",
+  {shellQuote: false, valueFrom: "|"},
+  "sort"]
+stdout: output.txt

draft-4/draft-4/dir2.cwl

@@ -0,0 +1,20 @@
+class: CommandLineTool
+cwlVersion: draft-4.dev2
+hints:
+  DockerRequirement:
+    dockerPull: debian:8
+  ShellCommandRequirement: {}
+inputs:
+  indir: Directory
+outputs:
+  outlist:
+    type: File
+    outputBinding:
+      glob: output.txt
+baseCommand: []
+arguments: ["cd", "$(inputs.indir.path)",
+  {shellQuote: false, valueFrom: "&&"},
+  "find", ".",
+  {shellQuote: false, valueFrom: "|"},
+  "sort"]
+stdout: output.txt

draft-4/draft-4/dir3-job.yml

@@ -0,0 +1,3 @@
+inf:
+  class: File
+  path: hello.tar

draft-4/draft-4/dir3.cwl

@@ -0,0 +1,13 @@
+class: CommandLineTool
+cwlVersion: draft-4.dev2
+baseCommand: [tar, xvf]
+inputs:
+  inf:
+    type: File
+    inputBinding:
+      position: 1
+outputs:
+  outdir:
+    type: Directory
+    outputBinding:
+      glob: .