Catch IndexError in Qvality when PEP cannot be calculated (see statis…

…ticalbiotechnology/triqler#29, fixes #165)
compomics · Aug 21, 2024 · 03a7c24 · 03a7c24
1 parent 37fa41a
commit 03a7c24
Showing 1 changed file with 2 additions and 1 deletion.
diff --git a/ms2rescore/report/utils.py b/ms2rescore/report/utils.py
@@ -70,7 +70,8 @@ def get_confidence_estimates(
     for when, scores in [("before", score_before), ("after", score_after)]:
         try:
             confidence[when] = lin_psm_dataset.assign_confidence(scores=scores)
-        except RuntimeError:
+        except (RuntimeError, IndexError):
             confidence[when] = None
+            logger.warning("Could not assign confidence estimates for %s rescoring.", when)
 
     return confidence["before"], confidence["after"]