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environment variable CLANG not set #43

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Anthchirp opened this issue Nov 16, 2020 · 1 comment · Fixed by #44
Closed

environment variable CLANG not set #43

Anthchirp opened this issue Nov 16, 2020 · 1 comment · Fixed by #44

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@Anthchirp
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Issue:

Installed clang 11. Activated environment.

$ env | grep CLANG
CLANGXX=(PREFIX)/bin/x86_64-apple-darwin13.4.0-clang++

but no CLANG to be seen.


Environment (conda list): 
$ conda list
# Name                    Version                   Build  Channel
alabaster                 0.7.12                     py_0    conda-forge
apipkg                    1.5                        py_0    conda-forge
attrs                     20.3.0             pyhd3deb0d_0    conda-forge
babel                     2.9.0              pyhd3deb0d_0    conda-forge
backports                 1.0                        py_2    conda-forge
backports.lzma            0.0.14           py38h6bd873d_3    conda-forge
biopython                 1.78             py38h4d0b108_1    conda-forge
boost                     1.74.0           py38h89463c3_1    conda-forge
boost-cpp                 1.74.0               he5d75e3_0    conda-forge
brotlipy                  0.7.0           py38h94c058a_1001    conda-forge
bzip2                     1.0.8                haf1e3a3_3    conda-forge
c-ares                    1.16.1               haf1e3a3_3    conda-forge
c-compiler                1.1.2                hc929b4f_0    conda-forge
ca-certificates           2020.11.8            h033912b_0    conda-forge
cctools                   949.0.1             h8821f95_16    conda-forge
cctools_osx-64            949.0.1             h8e49ea9_16    conda-forge
certifi                   2020.11.8        py38h50d1736_0    conda-forge
cffi                      1.14.3           py38h9edaa1b_1    conda-forge
chardet                   3.0.4           py38h5347e94_1008    conda-forge
clang                     11.0.0                        1    conda-forge
clang-11                  11.0.0          default_h000dee7_1    conda-forge
clang_osx-64              11.0.0               hb91bd55_4    conda-forge
clangxx                   11.0.0          default_hf57f61e_1    conda-forge
clangxx_osx-64            11.0.0               h7e1b574_4    conda-forge
colorlog                  4.6.2            py38h50d1736_0    conda-forge
compiler-rt               11.0.0               h01488ec_2    conda-forge
compiler-rt_osx-64        11.0.0               hd3c4e95_2    conda-forge
compilers                 1.1.2                h694c41f_0    conda-forge
conda                     4.9.2            py38h50d1736_0    conda-forge
conda-package-handling    1.7.2            py38h94c058a_0    conda-forge
cryptography              3.2.1            py38h5c1d3f9_0    conda-forge
cxx-compiler              1.1.2                h9a9d8cb_0    conda-forge
cycler                    0.10.0                     py_2    conda-forge
dials-data                2.1.32             pyhd8ed1ab_0    conda-forge
docutils                  0.16             py38h5347e94_2    conda-forge
eigen                     3.3.8                h6516342_0    conda-forge
execnet                   1.7.1                      py_0    conda-forge
expat                     2.2.9                hb1e8313_2    conda-forge
fortran-compiler          1.1.2                hcc3dc05_0    conda-forge
freetype                  2.10.4               h3f75d11_0    conda-forge
future                    0.18.2           py38h50d1736_2    conda-forge
gettext                   0.19.8.1          haf92f58_1004    conda-forge
gfortran_impl_osx-64      7.5.0               h34a0dec_13    conda-forge
gfortran_osx-64           7.5.0               h1174d25_10    conda-forge
gmp                       6.2.0                h2e338ed_4    conda-forge
h5py                      2.10.0          nompi_py38hf6831e1_105    conda-forge
hdf5                      1.10.6          nompi_hc457bb4_1110    conda-forge
hdf5-external-filter-plugins 0.1.0                h694c41f_5    conda-forge
hdf5-external-filter-plugins-bitshuffle 0.1.0                hb22d7dc_5    conda-forge
hdf5-external-filter-plugins-bzip2 0.1.0                h64c37c2_5    conda-forge
hdf5-external-filter-plugins-lz4 0.1.0                hb22d7dc_5    conda-forge
icu                       67.1                 hb1e8313_0    conda-forge
idna                      2.10               pyh9f0ad1d_0    conda-forge
imagesize                 1.2.0                      py_0    conda-forge
importlib_resources       3.3.0            py38h50d1736_0    conda-forge
iniconfig                 1.1.1              pyh9f0ad1d_0    conda-forge
iota                      1.4.20             pyh9f0ad1d_0    conda-forge
isl                       0.22.1               hb1e8313_2    conda-forge
jinja2                    2.11.2             pyh9f0ad1d_0    conda-forge
joblib                    0.17.0                     py_0    conda-forge
jpeg                      9d                   hbcb3906_0    conda-forge
kiwisolver                1.3.1            py38h9250c2b_0    conda-forge
krb5                      1.17.1               h75d18d8_3    conda-forge
lcms2                     2.11                 h11f7e16_1    conda-forge
ld64                      530                 h755cc8a_16    conda-forge
ld64_osx-64               530                 h66d9e41_16    conda-forge
ldid                      2.1.2                h7660a38_2    conda-forge
libblas                   3.9.0                2_openblas    conda-forge
libcblas                  3.9.0                2_openblas    conda-forge
libclang-cpp11            11.0.0          default_h000dee7_1    conda-forge
libcurl                   7.71.1               h9bf37e3_8    conda-forge
libcxx                    11.0.0               h439d374_0    conda-forge
libedit                   3.1.20191231         h0678c8f_2    conda-forge
libev                     4.33                 haf1e3a3_1    conda-forge
libffi                    3.2.1             hb1e8313_1007    conda-forge
libgfortran               4.0.0               h50e675f_13    conda-forge
libgfortran-devel_osx-64  7.5.0               h50e675f_13    conda-forge
libgfortran4              7.5.0               h50e675f_13    conda-forge
libiconv                  1.16                 haf1e3a3_0    conda-forge
liblapack                 3.9.0                2_openblas    conda-forge
libllvm11                 11.0.0               hf85e3d2_0    conda-forge
libnghttp2                1.41.0               h7580e61_2    conda-forge
libopenblas               0.3.12          openmp_h63d9170_1    conda-forge
libpng                    1.6.37               h7cec526_2    conda-forge
libssh2                   1.9.0                h8a08a2b_5    conda-forge
libtiff                   4.1.0                hca7d577_6    conda-forge
libwebp-base              1.1.0                hbcb3906_3    conda-forge
llvm-openmp               11.0.0               h73239a0_1    conda-forge
llvm-tools                11.0.0               hf85e3d2_0    conda-forge
lz4-c                     1.9.2                hb1e8313_3    conda-forge
markupsafe                1.1.1            py38h94c058a_2    conda-forge
matplotlib-base           3.3.3            py38h9bfd75d_0    conda-forge
mock                      4.0.2            py38h32f6830_1    conda-forge
more-itertools            8.6.0              pyhd8ed1ab_0    conda-forge
mpc                       1.1.0             ha57cd0f_1009    conda-forge
mpfr                      4.0.2                h72d8aaf_1    conda-forge
mrcfile                   1.1.2              pyh9f0ad1d_2    conda-forge
msgpack-c                 3.3.0                h47b1a2d_2    conda-forge
msgpack-python            1.0.0            py38h02bb52f_2    conda-forge
ncurses                   6.2                  h2e338ed_4    conda-forge
numpy                     1.19.4           py38hcf469a5_1    conda-forge
olefile                   0.46               pyh9f0ad1d_1    conda-forge
openssl                   1.1.1h               haf1e3a3_0    conda-forge
orderedset                2.0.3            py38h4d0b108_3    conda-forge
packaging                 20.4               pyh9f0ad1d_0    conda-forge
pathlib2                  2.3.5            py38h50d1736_2    conda-forge
pillow                    8.0.1            py38h565d989_0    conda-forge
pip                       20.2.4                     py_0    conda-forge
pluggy                    0.13.1           py38h5347e94_3    conda-forge
procrunner                2.3.0              pyhd8ed1ab_0    conda-forge
psutil                    5.7.3            py38h94c058a_0    conda-forge
pthread-stubs             0.4               h1de35cc_1001    conda-forge
py                        1.9.0              pyh9f0ad1d_0    conda-forge
pycosat                   0.6.3           py38h94c058a_1005    conda-forge
pycparser                 2.20               pyh9f0ad1d_2    conda-forge
pygments                  2.7.2                      py_0    conda-forge
pyopenssl                 19.1.0                     py_1    conda-forge
pyparsing                 2.4.7              pyh9f0ad1d_0    conda-forge
pypubsub                  4.0.3                      py_0    conda-forge
pyrtf                     0.45                       py_2    conda-forge
pysocks                   1.7.1            py38h5347e94_2    conda-forge
pytest                    6.1.2            py38h50d1736_0    conda-forge
pytest-forked             1.2.0              pyh9f0ad1d_0    conda-forge
pytest-mock               1.13.0                   py38_0    conda-forge
pytest-xdist              2.1.0                      py_0    conda-forge
python                    3.8.6           hcfdab8c_0_cpython    conda-forge
python-dateutil           2.8.1                      py_0    conda-forge
python.app                1.3              py38h4d0b108_3    conda-forge
python_abi                3.8                      1_cp38    conda-forge
pytz                      2020.4             pyhd8ed1ab_0    conda-forge
pyyaml                    5.3.1            py38h94c058a_1    conda-forge
readline                  8.0                  h0678c8f_2    conda-forge
reportlab                 3.5.55           py38h2d7e1c8_0    conda-forge
requests                  2.25.0             pyhd3deb0d_0    conda-forge
ruamel_yaml               0.15.80         py38h94c058a_1003    conda-forge
scikit-learn              0.23.2           py38hc729cd9_2    conda-forge
scipy                     1.5.3            py38h352ea5d_0    conda-forge
scons                     4.0.1            py38h32f6830_1    conda-forge
setuptools                49.6.0           py38h5347e94_2    conda-forge
six                       1.15.0             pyh9f0ad1d_0    conda-forge
snowballstemmer           2.0.0                      py_0    conda-forge
sphinx                    3.1.2                      py_0    conda-forge
sphinxcontrib-applehelp   1.0.2                      py_0    conda-forge
sphinxcontrib-devhelp     1.0.2                      py_0    conda-forge
sphinxcontrib-htmlhelp    1.0.3                      py_0    conda-forge
sphinxcontrib-jsmath      1.0.1                      py_0    conda-forge
sphinxcontrib-qthelp      1.0.3                      py_0    conda-forge
sphinxcontrib-serializinghtml 1.1.4                      py_0    conda-forge
sqlite                    3.33.0               h960bd1c_1    conda-forge
tabulate                  0.8.7              pyh9f0ad1d_0    conda-forge
tapi                      1100.0.11            h9ce4665_0    conda-forge
threadpoolctl             2.1.0              pyh5ca1d4c_0    conda-forge
tk                        8.6.10               hb0a8c7a_1    conda-forge
toml                      0.10.2             pyhd8ed1ab_0    conda-forge
tornado                   6.1              py38h7e3306e_0    conda-forge
tqdm                      4.51.0             pyh9f0ad1d_0    conda-forge
urllib3                   1.25.11                    py_0    conda-forge
wheel                     0.35.1             pyh9f0ad1d_0    conda-forge
wxpython                  4.0.7.post2      py38h10bb4de_3    conda-forge
xz                        5.2.5                haf1e3a3_1    conda-forge
yaml                      0.2.5                haf1e3a3_0    conda-forge
zlib                      1.2.11            h7795811_1010    conda-forge
zstd                      1.4.5                h289c70a_2    conda-forge

Details about conda and system ( conda info ): 
$ conda info
     active environment : base
    active env location : (PREFIX)
            shell level : 1
       user config file : (HOME)/.condarc
 populated config files : (PREFIX)/.condarc
          conda version : 4.9.2
    conda-build version : not installed
         python version : 3.8.6.final.0
       virtual packages : __osx=10.14.6=0
                          __unix=0=0
                          __archspec=1=x86_64
       base environment : (PREFIX)   (writable)
           channel URLs : https://conda.anaconda.org/conda-forge/osx-64
                          https://conda.anaconda.org/conda-forge/noarch
          package cache : (PREFIX)/pkgs
                          (HOME)/.conda/pkgs
       envs directories : (PREFIX)/envs
                          (HOME)/.conda/envs
               platform : osx-64
             user-agent : conda/4.9.2 requests/2.25.0 CPython/3.8.6 Darwin/18.7.0 OSX/10.14.6
                UID:GID : 503:20
             netrc file : None
           offline mode : False

This used to work on clang 10:

$ conda create -n clang2 -c conda-forge clang=10 compilers
$ conda activate clang2
$ env | grep CLANG
CLANGXX=(PREFIX)/envs/clang2/bin/x86_64-apple-darwin13.4.0-clang++
CONDA_BACKUP_CLANG=(PREFIX)/bin/x86_64-apple-darwin13.4.0-clang
CLANG=(PREFIX)/envs/clang2/bin/x86_64-apple-darwin13.4.0-clang
@isuruf isuruf transferred this issue from conda-forge/clangdev-feedstock Nov 16, 2020
@isuruf
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isuruf commented Nov 16, 2020

There's an extra comma at https://github.com/conda-forge/clang-compiler-activation-feedstock/blob/master/recipe/activate-clang.sh#L158 that should be removed

Anthchirp added a commit to Anthchirp/clang-compiler-activation-feedstock that referenced this issue Nov 16, 2020
@Anthchirp
remove comma, fixes conda-forge#43
6303d51
@Anthchirp Anthchirp mentioned this issue Nov 16, 2020
Merged
4 tasks
isuruf added a commit that referenced this issue Nov 17, 2020
@isuruf
Merge pull request #44 from Anthchirp/no-comma
4a45f50 
remove comma, fix #43
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remove comma, fix #43 Anthchirp/clang-compiler-activation-feedstock
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@Anthchirp @isuruf