KeyError if using recent conda 22.11.1 release #292
Comments
More info... Command: ['/opt/conda/envs/condalock/bin/mamba', 'create', '--prefix', '/tmp/tmpkgpw63uo/prefix', '--dry-run', '--json', '--override-channels', '--channel', 'conda-forge', '--channel', 'file:///tmp/tmpny2cp5xg', 'gdal']
STDOUT:
{
"command": "/opt/conda/envs/condalock/bin/mamba create --prefix /tmp/tmpkgpw63uo/prefix --dry-run --json --override-channels --channel conda-forge --channel file:///tmp/tmpny2cp5xg gdal",
"conda_info": {
"GID": 0,
"UID": 0,
"active_prefix": "/opt/conda/envs/condalock",
"active_prefix_name": "base",
"av_data_dir": "/opt/conda/envs/condalock/etc/conda",
"av_metadata_url_base": null,
"channels": [
"https://conda.anaconda.org/conda-forge/linux-64",
"https://conda.anaconda.org/conda-forge/noarch",
"file:///tmp/tmpny2cp5xg/linux-64",
"file:///tmp/tmpny2cp5xg/noarch"
],
"conda_build_version": "not installed",
"conda_env_version": "22.11.1",
"conda_location": "/opt/conda/envs/condalock/lib/python3.11/site-packages/conda",
"conda_prefix": "/opt/conda/envs/condalock",
"conda_shlvl": 2,
"conda_version": "22.11.1",
"config_files": [],
"default_prefix": "/opt/conda/envs/condalock",
"env_vars": {
"CIO_TEST": "<not set>",
"CONDA_ADD_PIP_AS_PYTHON_DEPENDENCY": "False",
"CONDA_DEFAULT_ENV": "condalock",
"CONDA_DIR": "/opt/conda",
"CONDA_EXE": "/opt/conda/bin/conda",
"CONDA_OVERRIDE_ARCHSPEC": "",
"CONDA_OVERRIDE_CUDA": "",
"CONDA_OVERRIDE_GLIBC": "",
"CONDA_OVERRIDE_LINUX": "",
"CONDA_OVERRIDE_OSX": "",
"CONDA_OVERRIDE_UNIX": "",
"CONDA_OVERRIDE_WIN": "",
"CONDA_PKGS_DIRS": "/tmp/tmpkgpw63uo",
"CONDA_PREFIX": "/opt/conda/envs/condalock",
"CONDA_PREFIX_1": "/opt/conda",
"CONDA_PROMPT_MODIFIER": "(condalock) ",
"CONDA_PYTHON_EXE": "/opt/conda/bin/python",
"CONDA_ROOT": "/opt/conda/envs/condalock",
"CONDA_SHLVL": "2",
"CONDA_SUBDIR": "linux-64",
"CONDA_UNSATISFIABLE_HINTS_CHECK_DEPTH": "0",
"CURL_CA_BUNDLE": "<not set>",
"LD_PRELOAD": "<not set>",
"PATH": "/opt/conda/envs/condalock/bin:/opt/conda/condabin:/opt/conda/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin",
"REQUESTS_CA_BUNDLE": "<not set>",
"SSL_CERT_FILE": "<not set>"
},
"envs": [],
"envs_dirs": [
"/opt/conda/envs/condalock/envs",
"/root/.conda/envs"
],
"netrc_file": null,
"offline": false,
"pkgs_dirs": [
"/tmp/tmpkgpw63uo"
],
"platform": "linux-64",
"python_version": "3.11.0.final.0",
"rc_path": "/root/.condarc",
"requests_version": "2.28.1",
"root_prefix": "/opt/conda/envs/condalock",
"root_writable": true,
"site_dirs": [],
"sys.executable": "/opt/conda/envs/condalock/bin/python",
"sys.prefix": "/opt/conda/envs/condalock",
"sys.version": "3.11.0 | packaged by conda-forge | (main, Oct 25 2022, 06:24:40) [GCC 10.4.0]",
"sys_rc_path": "/opt/conda/envs/condalock/.condarc",
"user_agent": "conda/22.11.1 requests/2.28.1 CPython/3.11.0 Linux/5.15.0-56-generic ubuntu/20.04.1 glibc/2.31",
"user_rc_path": "/root/.condarc",
"virtual_pkgs": [
[
"__archspec",
"1",
"x86_64"
],
[
"__glibc",
"0",
"0"
],
[
"__linux",
"0",
"0"
],
[
"__unix",
"0",
"0"
]
]
},
"error": "KeyError(PackageRecord(_hash=-7012913248850476199, name='__glibc', version='0', build='0', build_number=0, channel=Channel(\"@\"), subdir='linux-64', fn='__glibc', md5='12345678901234567890123456789012', package_type='virtual_system'))",
"exception_name": "KeyError",
"exception_type": "<class 'KeyError'>",
"traceback": "Traceback (most recent call last):\n File \"/opt/conda/envs/condalock/lib/python3.11/site-packages/conda/_vendor/boltons/setutils.py\", line 247, in remove\n didx = self.item_index_map.pop(item)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\nKeyError: PackageRecord(_hash=-7012913248850476199, name='__glibc', version='0', build='0', build_number=0, channel=Channel(\"@\"), subdir='linux-64', fn='__glibc', md5='12345678901234567890123456789012', package_type='virtual_system')\n\nDuring handling of the above exception, another exception occurred:\n\nTraceback (most recent call last):\n File \"/opt/conda/envs/condalock/lib/python3.11/site-packages/conda/exceptions.py\", line 1118, in __call__\n return func(*args, **kwargs)\n ^^^^^^^^^^^^^^^^^^^^^\n File \"/opt/conda/envs/condalock/lib/python3.11/site-packages/mamba/mamba.py\", line 936, in exception_converter\n raise e\n File \"/opt/conda/envs/condalock/lib/python3.11/site-packages/mamba/mamba.py\", line 929, in exception_converter\n exit_code = _wrapped_main(*args, **kwargs)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n File \"/opt/conda/envs/condalock/lib/python3.11/site-packages/mamba/mamba.py\", line 887, in _wrapped_main\n result = do_call(parsed_args, p)\n ^^^^^^^^^^^^^^^^^^^^^^^\n File \"/opt/conda/envs/condalock/lib/python3.11/site-packages/mamba/mamba.py\", line 754, in do_call\n exit_code = create(args, parser)\n ^^^^^^^^^^^^^^^^^^^^\n File \"/opt/conda/envs/condalock/lib/python3.11/site-packages/mamba/mamba.py\", line 630, in create\n return install(args, parser, \"create\")\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n File \"/opt/conda/envs/condalock/lib/python3.11/site-packages/mamba/mamba.py\", line 588, in install\n conda_transaction = to_txn(\n ^^^^^^^\n File \"/opt/conda/envs/condalock/lib/python3.11/site-packages/mamba/utils.py\", line 436, in to_txn\n final_precs = compute_final_precs(\n ^^^^^^^^^^^^^^^^^^^^\n File \"/opt/conda/envs/condalock/lib/python3.11/site-packages/mamba/utils.py\", line 371, in compute_final_precs\n final_precs.remove(i_rec)\n File \"/opt/conda/envs/condalock/lib/python3.11/site-packages/conda/_vendor/boltons/setutils.py\", line 249, in remove\n raise KeyError(item)\nKeyError: PackageRecord(_hash=-7012913248850476199, name='__glibc', version='0', build='0', build_number=0, channel=Channel(\"@\"), subdir='linux-64', fn='__glibc', md5='12345678901234567890123456789012', package_type='virtual_system')\n"
}
|
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I can confirm this problem happening with this repository: https://github.com/BoiseState/bookdata-tools Downgrading Conda to 22.9 fixes it. I am not sure if the fix is due to the Conda downgrade, or the corresponding Mamba downgrade - downgrading my |
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Thanks for the additional info! Indeed, from my previous "More info..." message, here's the formatted version of the traceback: Traceback:Traceback (most recent call last):
File "/opt/conda/envs/condalock/lib/python3.11/site-packages/conda/_vendor/boltons/setutils.py", line 247, in remove
didx = self.item_index_map.pop(item)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
KeyError: PackageRecord(_hash=-7012913248850476199, name='__glibc', version='0', build='0', build_number=0, channel=Channel("@"), subdir='linux-64', fn='__glibc', md5='12345678901234567890123456789012', package_type='virtual_system')
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/opt/conda/envs/condalock/lib/python3.11/site-packages/conda/exceptions.py", line 1118, in __call__
return func(*args, **kwargs)
^^^^^^^^^^^^^^^^^^^^^
File "/opt/conda/envs/condalock/lib/python3.11/site-packages/mamba/mamba.py", line 936, in exception_converter
raise e
File "/opt/conda/envs/condalock/lib/python3.11/site-packages/mamba/mamba.py", line 929, in exception_converter
exit_code = _wrapped_main(*args, **kwargs)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/opt/conda/envs/condalock/lib/python3.11/site-packages/mamba/mamba.py", line 887, in _wrapped_main
result = do_call(parsed_args, p)
^^^^^^^^^^^^^^^^^^^^^^^
File "/opt/conda/envs/condalock/lib/python3.11/site-packages/mamba/mamba.py", line 754, in do_call
exit_code = create(args, parser)
^^^^^^^^^^^^^^^^^^^^
File "/opt/conda/envs/condalock/lib/python3.11/site-packages/mamba/mamba.py", line 630, in create
return install(args, parser, "create")
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/opt/conda/envs/condalock/lib/python3.11/site-packages/mamba/mamba.py", line 588, in install
conda_transaction = to_txn(
^^^^^^^
File "/opt/conda/envs/condalock/lib/python3.11/site-packages/mamba/utils.py", line 436, in to_txn
final_precs = compute_final_precs(
^^^^^^^^^^^^^^^^^^^^
File "/opt/conda/envs/condalock/lib/python3.11/site-packages/mamba/utils.py", line 371, in compute_final_precs
final_precs.remove(i_rec)
File "/opt/conda/envs/condalock/lib/python3.11/site-packages/conda/_vendor/boltons/setutils.py", line 249, in remove
raise KeyError(item)
KeyError: PackageRecord(_hash=-7012913248850476199, name='__glibc', version='0', build='0', build_number=0, channel=Channel("@"), subdir='linux-64', fn='__glibc', md5='12345678901234567890123456789012', package_type='virtual_system')So it appears that conda-lock invokes Mamba, which then invokes the installed Conda. It then fails when it tries to remove the indicated It would be nice if conda-lock were better at parsing these error messages and printing the corresponding traceback directly. |
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I think this boils down to conda=22.11 treating the CONDA_OVERRIDE_* variables differently. For this example file, conda-lock exports a lot of This behaviour however seems to have changed in conda=22.11, where this now causes the error observed by OP. |
croth1
added a commit
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that referenced
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Jan 23, 2023
croth1
added a commit
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that referenced
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Jan 23, 2023
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This sounds like something that could have been fixed in conda/conda#12257 that will be part of conda 23.1.0 |
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Hmm, reproducing this one is way more complicated than I thought :( I think this should do: # fine on 22.9
docker run --rm -e CONDA_OVERRIDE_GLIBC="" -v $(pwd)/mock_repo:/mock_repo condaforge/mambaforge:22.9.0-3 bash -c "conda create -c file:///mock_repo -n foo --dry-run python=3.9 gdal"
# fine on 22.11 without setting CONDA_OVERRIDE_GLIBC=""
docker run --rm -v $(pwd)/mock_repo:/mock_repo condaforge/mambaforge:22.9.0-3 bash -c "conda install conda=22.11 -n base -y; conda create -c file:///mock_repo -n foo --dry-run python=3.9 gdal"
# breaks with 22.11
docker run --rm -e CONDA_OVERRIDE_GLIBC="" -v $(pwd)/mock_repo:/mock_repo condaforge/mambaforge:22.9.0-3 bash -c "conda install conda=22.11 -n base -y; conda create -c file:///mock_repo -n foo --dry-run python=3.9 gdal"with a minimal dummy channel produced by conda-lock: gives: |
Closed
2 tasks
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I see there is an |
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It's surprising that the attached repodata.json contains virtual packages, which do not have the (optional according to Does a lock file created under an older pre-November conda include virtual packages? |
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Since the original authors seem to be quite busy right now and I am not very familiar with the inner workings of conda-lock I have to speculate a bit. The 22.9 generated lockfile itself does not seem to include any virtual packages: conda-lock.yml# This lock file was generated by conda-lock (https://github.com/conda-incubator/conda-lock). DO NOT EDIT!
#
# A "lock file" contains a concrete list of package versions (with checksums) to be installed. Unlike
# e.g. `conda env create`, the resulting environment will not change as new package versions become
# available, unless you explicitly update the lock file.
#
# Install this environment as "YOURENV" with:
# conda-lock install -n YOURENV --file conda-lock.yml
# To update a single package to the latest version compatible with the version constraints in the source:
# conda-lock lock --lockfile conda-lock.yml --update PACKAGE
# To re-solve the entire environment, e.g. after changing a version constraint in the source file:
# conda-lock -f /conda-lock/test_configs/simplest.yml --lockfile conda-lock.yml
metadata:
channels:
- url: conda-forge
used_env_vars: []
content_hash:
linux-64: 44713c1db6f1ea70470d0ac9c42eb5ca9667ac3ab54f7bde7cb4311d09c2eeb6
platforms:
- linux-64
sources:
- /conda-lock/test_configs/simplest.yml
package:
- category: main
dependencies: {}
hash:
md5: d7c89558ba9fa0495403155b64376d81
sha256: fe51de6107f9edc7aa4f786a70f4a883943bc9d39b3bb7307c04c41410990726
manager: conda
name: _libgcc_mutex
optional: false
platform: linux-64
url: https://conda.anaconda.org/conda-forge/linux-64/_libgcc_mutex-0.1-conda_forge.tar.bz2
version: '0.1'
- category: main
dependencies: {}
hash:
md5: ff9f73d45c4a07d6f424495288a26080
sha256: 8f6c81b0637771ae0ea73dc03a6d30bec3326ba3927f2a7b91931aa2d59b1789
manager: conda
name: ca-certificates
optional: false
platform: linux-64
url: https://conda.anaconda.org/conda-forge/linux-64/ca-certificates-2022.12.7-ha878542_0.conda
version: 2022.12.7
- category: main
dependencies: {}
hash:
md5: 0c96522c6bdaed4b1566d11387caaf45
sha256: 58d7f40d2940dd0a8aa28651239adbf5613254df0f75789919c4e6762054403b
manager: conda
name: font-ttf-dejavu-sans-mono
optional: false
platform: linux-64
url: https://conda.anaconda.org/conda-forge/noarch/font-ttf-dejavu-sans-mono-2.37-hab24e00_0.tar.bz2
version: '2.37'
- category: main
dependencies: {}
hash:
md5: 34893075a5c9e55cdafac56607368fc6
sha256: c52a29fdac682c20d252facc50f01e7c2e7ceac52aa9817aaf0bb83f7559ec5c
manager: conda
name: font-ttf-inconsolata
optional: false
platform: linux-64
url: https://conda.anaconda.org/conda-forge/noarch/font-ttf-inconsolata-3.000-h77eed37_0.tar.bz2
version: '3.000'
- category: main
dependencies: {}
hash:
md5: 4d59c254e01d9cde7957100457e2d5fb
sha256: 00925c8c055a2275614b4d983e1df637245e19058d79fc7dd1a93b8d9fb4b139
manager: conda
name: font-ttf-source-code-pro
optional: false
platform: linux-64
url: https://conda.anaconda.org/conda-forge/noarch/font-ttf-source-code-pro-2.038-h77eed37_0.tar.bz2
version: '2.038'
- category: main
dependencies: {}
hash:
md5: 19410c3df09dfb12d1206132a1d357c5
sha256: 470d5db54102bd51dbb0c5990324a2f4a0bc976faa493b22193338adb9882e2e
manager: conda
name: font-ttf-ubuntu
optional: false
platform: linux-64
url: https://conda.anaconda.org/conda-forge/noarch/font-ttf-ubuntu-0.83-hab24e00_0.tar.bz2
version: '0.83'
- category: main
dependencies: {}
hash:
md5: 737be0d34c22d24432049ab7a3214de4
sha256: 3e7f203e33ea497b6e468279cc5fdef7d556473c25e7466b35fd672940392469
manager: conda
name: ld_impl_linux-64
optional: false
platform: linux-64
url: https://conda.anaconda.org/conda-forge/linux-64/ld_impl_linux-64-2.39-hcc3a1bd_1.conda
version: '2.39'
- category: main
dependencies: {}
hash:
md5: 164b4b1acaedc47ee7e658ae6b308ca3
sha256: 03ea784edd12037dc3a7a0078ff3f9c3383feabb34d5ba910bb2fd7a21a2d961
manager: conda
name: libgfortran5
optional: false
platform: linux-64
url: https://conda.anaconda.org/conda-forge/linux-64/libgfortran5-12.2.0-h337968e_19.tar.bz2
version: 12.2.0
- category: main
dependencies: {}
hash:
md5: 1030b1f38c129f2634eae026f704fe60
sha256: 0289e6a7b9a5249161a3967909e12dcfb4ab4475cdede984635d3fb65c606f08
manager: conda
name: libstdcxx-ng
optional: false
platform: linux-64
url: https://conda.anaconda.org/conda-forge/linux-64/libstdcxx-ng-12.2.0-h46fd767_19.tar.bz2
version: 12.2.0
- category: main
dependencies: {}
hash:
md5: abc27381c4f005da588cffa1f76403ee
sha256: ccd2857627c0f6e903a917b99e60860c0a2b7dc553a32cf7c1ab55f0af99ec11
manager: conda
name: poppler-data
optional: false
platform: linux-64
url: https://conda.anaconda.org/conda-forge/noarch/poppler-data-0.4.11-hd8ed1ab_0.tar.bz2
version: 0.4.11
- category: main
dependencies: {}
hash:
md5: c2e2630ddb68cf52eec74dc7dfab20b5
sha256: 2966a87dcb0b11fad28f9fe8216bfa4071115776b47ffc7547492fed176e1a1f
manager: conda
name: python_abi
optional: false
platform: linux-64
url: https://conda.anaconda.org/conda-forge/linux-64/python_abi-3.11-3_cp311.conda
version: '3.11'
- category: main
dependencies: {}
hash:
md5: 51fc4fcfb19f5d95ffc8c339db5068e8
sha256: 0bfae0b9962bc0dbf79048f9175b913ed4f53c4310d06708dc7acbb290ad82f6
manager: conda
name: tzdata
optional: false
platform: linux-64
url: https://conda.anaconda.org/conda-forge/noarch/tzdata-2022g-h191b570_0.conda
version: 2022g
- category: main
dependencies:
font-ttf-dejavu-sans-mono: ''
font-ttf-inconsolata: ''
font-ttf-source-code-pro: ''
font-ttf-ubuntu: ''
hash:
md5: f766549260d6815b0c52253f1fb1bb29
sha256: 53f23a3319466053818540bcdf2091f253cbdbab1e0e9ae7b9e509dcaa2a5e38
manager: conda
name: fonts-conda-forge
optional: false
platform: linux-64
url: https://conda.anaconda.org/conda-forge/noarch/fonts-conda-forge-1-0.tar.bz2
version: '1'
- category: main
dependencies:
libgfortran5: 12.2.0 h337968e_19
hash:
md5: cd7a806282c16e1f2d39a7e80d3a3e0d
sha256: c7d061f323e80fbc09564179073d8af303bf69b953b0caddcf79b47e352c746f
manager: conda
name: libgfortran-ng
optional: false
platform: linux-64
url: https://conda.anaconda.org/conda-forge/linux-64/libgfortran-ng-12.2.0-h69a702a_19.tar.bz2
version: 12.2.0
- category: main
dependencies:
_libgcc_mutex: 0.1 conda_forge
hash:
md5: cedcee7c064c01c403f962c9e8d3c373
sha256: 81a76d20cfdee9fe0728b93ef057ba93494fd1450d42bc3717af4e468235661e
manager: conda
name: libgomp
optional: false
platform: linux-64
url: https://conda.anaconda.org/conda-forge/linux-64/libgomp-12.2.0-h65d4601_19.tar.bz2
version: 12.2.0
- category: main
dependencies:
_libgcc_mutex: 0.1 conda_forge
libgomp: '>=7.5.0'
hash:
md5: 73aaf86a425cc6e73fcf236a5a46396d
sha256: fbe2c5e56a653bebb982eda4876a9178aedfc2b545f25d0ce9c4c0b508253d22
manager: conda
name: _openmp_mutex
optional: false
platform: linux-64
url: https://conda.anaconda.org/conda-forge/linux-64/_openmp_mutex-4.5-2_gnu.tar.bz2
version: '4.5'
- category: main
dependencies:
fonts-conda-forge: ''
hash:
md5: fee5683a3f04bd15cbd8318b096a27ab
sha256: a997f2f1921bb9c9d76e6fa2f6b408b7fa549edd349a77639c9fe7a23ea93e61
manager: conda
name: fonts-conda-ecosystem
optional: false
platform: linux-64
url: https://conda.anaconda.org/conda-forge/noarch/fonts-conda-ecosystem-1-0.tar.bz2
version: '1'
- category: main
dependencies:
_libgcc_mutex: 0.1 conda_forge
_openmp_mutex: '>=4.5'
hash:
md5: e4c94f80aef025c17ab0828cd85ef535
sha256: f3899c26824cee023f1e360bd0859b0e149e2b3e8b1668bc6dd04bfc70dcd659
manager: conda
name: libgcc-ng
optional: false
platform: linux-64
url: https://conda.anaconda.org/conda-forge/linux-64/libgcc-ng-12.2.0-h65d4601_19.tar.bz2
version: 12.2.0
- category: main
dependencies:
libgcc-ng: '>=9.3.0'
hash:
md5: a1fd65c7ccbf10880423d82bca54eb54
sha256: cb521319804640ff2ad6a9f118d972ed76d86bea44e5626c09a13d38f562e1fa
manager: conda
name: bzip2
optional: false
platform: linux-64
url: https://conda.anaconda.org/conda-forge/linux-64/bzip2-1.0.8-h7f98852_4.tar.bz2
version: 1.0.8
- category: main
dependencies:
libgcc-ng: '>=9.4.0'
hash:
md5: f26ef8098fab1f719c91eb760d63381a
sha256: ee735e60d2cf68e5635df17847e97b505a752985d10581d2438203e7c0f44c15
manager: conda
name: c-ares
optional: false
platform: linux-64
url: https://conda.anaconda.org/conda-forge/linux-64/c-ares-1.18.1-h7f98852_0.tar.bz2
version: 1.18.1
- category: main
dependencies:
libgcc-ng: '>=12'
libstdcxx-ng: '>=12'
hash:
md5: c4fbad8d4bddeb3c085f18cbf97fbfad
sha256: b44db0b92ae926b3fbbcd57c179fceb64fa11a9f9d09082e03be58b74dcad832
manager: conda
name: expat
optional: false
platform: linux-64
url: https://conda.anaconda.org/conda-forge/linux-64/expat-2.5.0-h27087fc_0.tar.bz2
version: 2.5.0
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sha256: f83472851e0fc2834c881f6962e324cd0c7a96afe9d575f9cce599dd19436446
manager: conda
name: hdf5
optional: false
platform: linux-64
url: https://conda.anaconda.org/conda-forge/linux-64/hdf5-1.12.2-nompi_h4df4325_101.conda
version: 1.12.2
- category: main
dependencies:
krb5: '>=1.20.1,<1.21.0a0'
libgcc-ng: '>=12'
libpq: 15.1 hb675445_3
libxml2: '>=2.10.3,<2.11.0a0'
libzlib: '>=1.2.13,<1.3.0a0'
openssl: '>=3.0.7,<4.0a0'
readline: '>=8.1.2,<9.0a0'
tzcode: ''
tzdata: ''
zlib: ''
hash:
md5: 4f686d5d582a3e3b32a3cb010fa12103
sha256: c44d0aec97d552bac0e0ad310fe55c6989d5ae9b6bec2ac448072ab6ed295511
manager: conda
name: postgresql
optional: false
platform: linux-64
url: https://conda.anaconda.org/conda-forge/linux-64/postgresql-15.1-h3248436_3.conda
version: '15.1'
- category: main
dependencies:
libcurl: '>=7.87.0,<8.0a0'
libgcc-ng: '>=12'
libsqlite: '>=3.40.0,<4.0a0'
libstdcxx-ng: '>=12'
libtiff: '>=4.5.0,<4.6.0a0'
sqlite: ''
hash:
md5: c264aea0e16bba26afa0a0940e954492
sha256: c9fcbf2cab7a354394c2c91a0d57c324fd88234b59042c58b1012999ace00834
manager: conda
name: proj
optional: false
platform: linux-64
url: https://conda.anaconda.org/conda-forge/linux-64/proj-9.1.1-h8ffa02c_2.conda
version: 9.1.1
- category: main
dependencies:
icu: '>=70.1,<71.0a0'
libcurl: '>=7.85.0,<8.0a0'
libgcc-ng: '>=12'
libnsl: '>=2.0.0,<2.1.0a0'
libstdcxx-ng: '>=12'
hash:
md5: d127dc8efe24033b306180939e51e6af
sha256: 63a799ef355a4d01f6789ecf31fbfa1b96f8a6bbee1a3b4be6d5d34158eb32a5
manager: conda
name: xerces-c
optional: false
platform: linux-64
url: https://conda.anaconda.org/conda-forge/linux-64/xerces-c-3.2.4-h55805fa_1.tar.bz2
version: 3.2.4
- category: main
dependencies:
jpeg: '>=9e,<10a'
libgcc-ng: '>=12'
libstdcxx-ng: '>=12'
libtiff: '>=4.5.0,<4.6.0a0'
libzlib: '>=1.2.13,<1.3.0a0'
proj: '>=9.1.1,<9.1.2.0a0'
zlib: ''
hash:
md5: b7963c107ed1f6a95cadc244f95cd3cd
sha256: ee04ac8993776a5298264bb3f5879da872bab14107cfae7a89f3e5d06bacecc5
manager: conda
name: geotiff
optional: false
platform: linux-64
url: https://conda.anaconda.org/conda-forge/linux-64/geotiff-1.7.1-h7a142b4_6.conda
version: 1.7.1
- category: main
dependencies:
hdf5: '>=1.12.2,<1.12.3.0a0'
libgcc-ng: '>=12'
libstdcxx-ng: '>=12'
hash:
md5: c948b920f45fd81a2dde8b1ab514cc84
sha256: 092e44e2a672c6366170d4414c41eed5cdf864f6cbc76b83be785117b8a66ed4
manager: conda
name: kealib
optional: false
platform: linux-64
url: https://conda.anaconda.org/conda-forge/linux-64/kealib-1.5.0-ha7026e8_0.conda
version: 1.5.0
- category: main
dependencies:
bzip2: '>=1.0.8,<2.0a0'
curl: ''
hdf4: '>=4.2.15,<4.2.16.0a0'
hdf5: '>=1.12.2,<1.12.3.0a0'
jpeg: '>=9e,<10a'
libgcc-ng: '>=12'
libstdcxx-ng: '>=12'
libxml2: '>=2.10.3,<2.11.0a0'
libzip: '>=1.9.2,<2.0a0'
libzlib: '>=1.2.13,<1.3.0a0'
hash:
md5: 9b25de670ce5753a33c18b1090d1d3bf
sha256: 2ccb50f85e11c19479c9986065673bbf86d3e9c5d451c16507da9488e41800fa
manager: conda
name: libnetcdf
optional: false
platform: linux-64
url: https://conda.anaconda.org/conda-forge/linux-64/libnetcdf-4.8.1-nompi_h261ec11_106.tar.bz2
version: 4.8.1
- category: main
dependencies:
freexl: '>=1.0.6,<2.0a0'
geos: '>=3.11.1,<3.11.2.0a0'
libgcc-ng: '>=12'
librttopo: '>=1.1.0,<1.2.0a0'
libsqlite: '>=3.40.0,<4.0a0'
libstdcxx-ng: '>=12'
libxml2: '>=2.10.3,<2.11.0a0'
libzlib: '>=1.2.13,<1.3.0a0'
proj: '>=9.1.1,<9.1.2.0a0'
sqlite: ''
zlib: ''
hash:
md5: 859297085081cfbc123dc60015864f6b
sha256: e2f6aae81ddb2ad63c4d06516de89da601dadd0b1aa2de3670f434f0501882ce
manager: conda
name: libspatialite
optional: false
platform: linux-64
url: https://conda.anaconda.org/conda-forge/linux-64/libspatialite-5.0.1-h221c8f1_23.conda
version: 5.0.1
- category: main
dependencies:
boost-cpp: '>=1.78.0,<1.78.1.0a0'
cairo: '>=1.16.0,<2.0a0'
fontconfig: '>=2.14.1,<3.0a0'
fonts-conda-ecosystem: ''
freetype: '>=2.12.1,<3.0a0'
gettext: '>=0.21.1,<1.0a0'
jpeg: '>=9e,<10a'
lcms2: '>=2.14,<3.0a0'
libcurl: '>=7.87.0,<8.0a0'
libgcc-ng: '>=12'
libglib: '>=2.74.1,<3.0a0'
libiconv: '>=1.17,<2.0a0'
libpng: '>=1.6.39,<1.7.0a0'
libstdcxx-ng: '>=12'
libtiff: '>=4.5.0,<4.6.0a0'
libzlib: '>=1.2.13,<1.3.0a0'
nss: '>=3.82,<4.0a0'
openjpeg: '>=2.5.0,<3.0a0'
poppler-data: ''
hash:
md5: 33ba6d8025df115bcbe50c69e9b808ed
sha256: de79119189e0c08733c2f47eda5c489d1bea7df426ab9a8f3a6eb524be5d6a98
manager: conda
name: poppler
optional: false
platform: linux-64
url: https://conda.anaconda.org/conda-forge/linux-64/poppler-23.01.0-h091648b_0.conda
version: 23.01.0
- category: main
dependencies:
bzip2: '>=1.0.8,<2.0a0'
curl: ''
libgcc-ng: '>=12'
libstdcxx-ng: '>=12'
libzlib: '>=1.2.13,<1.3.0a0'
lz4-c: '>=1.9.3,<1.10.0a0'
openssl: '>=3.0.7,<4.0a0'
zlib: ''
zstd: '>=1.5.2,<1.6.0a0'
hash:
md5: 6d97164f19dbd27575ef1899b02dc1e0
sha256: 406bf59089f80d553981a624c7c163b479f883f2f661a6aca3eb95aabebeb490
manager: conda
name: tiledb
optional: false
platform: linux-64
url: https://conda.anaconda.org/conda-forge/linux-64/tiledb-2.13.2-hd532e3d_0.conda
version: 2.13.2
- category: main
dependencies:
__glibc: '>=2.17,<3.0.a0'
blosc: '>=1.21.3,<2.0a0'
cfitsio: '>=4.2.0,<4.2.1.0a0'
expat: '>=2.5.0,<3.0a0'
freexl: '>=1.0.6,<2.0a0'
geos: '>=3.11.1,<3.11.2.0a0'
geotiff: '>=1.7.1,<1.8.0a0'
giflib: '>=5.2.1,<5.3.0a0'
hdf4: '>=4.2.15,<4.2.16.0a0'
hdf5: '>=1.12.2,<1.12.3.0a0'
icu: '>=70.1,<71.0a0'
jpeg: '>=9e,<10a'
json-c: '>=0.16,<0.17.0a0'
kealib: '>=1.5.0,<1.6.0a0'
lerc: '>=4.0.0,<5.0a0'
libcurl: '>=7.87.0,<8.0a0'
libdeflate: '>=1.17,<1.18.0a0'
libgcc-ng: '>=12'
libiconv: '>=1.17,<2.0a0'
libkml: '>=1.3.0,<1.4.0a0'
libnetcdf: '>=4.8.1,<4.8.2.0a0'
libpng: '>=1.6.39,<1.7.0a0'
libpq: '>=15.1,<16.0a0'
libspatialite: '>=5.0.1,<5.1.0a0'
libsqlite: '>=3.40.0,<4.0a0'
libstdcxx-ng: '>=12'
libtiff: '>=4.5.0,<4.6.0a0'
libuuid: '>=2.32.1,<3.0a0'
libwebp-base: '>=1.2.4,<2.0a0'
libxml2: '>=2.10.3,<2.11.0a0'
libzlib: '>=1.2.13,<1.3.0a0'
lz4-c: '>=1.9.3,<1.10.0a0'
openjpeg: '>=2.5.0,<3.0a0'
openssl: '>=3.0.7,<4.0a0'
pcre2: '>=10.40,<10.41.0a0'
poppler: '>=23.1.0,<23.2.0a0'
postgresql: ''
proj: '>=9.1.1,<9.1.2.0a0'
tiledb: '>=2.13.2,<2.14.0a0'
xerces-c: '>=3.2.4,<3.3.0a0'
xz: '>=5.2.6,<6.0a0'
zstd: '>=1.5.2,<1.6.0a0'
hash:
md5: b09f2d4b3b87a66b70df5778eed056b6
sha256: b88b0edbe0e236e57ebbdb7e8b8b606924cbc812fdc4e0fff0e38bfd3c55e6ec
manager: conda
name: libgdal
optional: false
platform: linux-64
url: https://conda.anaconda.org/conda-forge/linux-64/libgdal-3.6.2-h8c90c07_5.conda
version: 3.6.2
- category: main
dependencies:
hdf5: '>=1.12.2,<1.12.3.0a0'
libgcc-ng: '>=12'
libgdal: 3.6.2 h8c90c07_5
libstdcxx-ng: '>=12'
numpy: '>=1.23.5,<2.0a0'
openssl: '>=3.0.7,<4.0a0'
python: '>=3.11,<3.12.0a0'
python_abi: 3.11.* *_cp311
hash:
md5: 86dd2572afda619831ab9034a8beed8e
sha256: 9c8c2808126380343d6cc43b6cd5331fcd6cbb84e0e0577920307d4d540eee80
manager: conda
name: gdal
optional: false
platform: linux-64
url: https://conda.anaconda.org/conda-forge/linux-64/gdal-3.6.2-py311hadb6153_5.conda
version: 3.6.2
version: 1
|
|
Good to know. We'll have to see if the code for filter-out-virtual-packages regressed or looks different in 23.1 |
|
I checked out a copy of conda-lock from git. |
|
I also only see the error on linux-64 but not osx, hence the docker commands. I will double-check tomorrow that i get the same error with conda lock and latest conda, but i strongly suspect so from running into the same error with 22.11 and main. |
This was referenced Feb 23, 2023
2 tasks
|
I can reproduce this with All packages:
```
mamba list
# packages in environment at /opt/conda:
#
# Name Version Build Channel
_openmp_mutex 4.5 2_gnu conda-forge
appdirs 1.4.4 pyh9f0ad1d_0 conda-forge
brotlipy 0.7.0 py310h761cc84_1005 conda-forge
bzip2 1.0.8 hf897c2e_4 conda-forge
c-ares 1.18.1 hf897c2e_0 conda-forge
ca-certificates 2022.12.7 h4fd8a4c_0 conda-forge
cachecontrol 0.12.11 pyhd8ed1ab_1 conda-forge
cachecontrol-with-filecache 0.12.11 pyhd8ed1ab_1 conda-forge
cachy 0.3.0 pyhd8ed1ab_1 conda-forge
certifi 2022.12.7 pyhd8ed1ab_0 conda-forge
cffi 1.15.1 py310hf0c4615_3 conda-forge
charset-normalizer 2.1.1 pyhd8ed1ab_0 conda-forge
click 8.1.3 unix_pyhd8ed1ab_2 conda-forge
click-default-group 1.2.2 pyhd8ed1ab_1 conda-forge
clikit 0.6.2 pyhd8ed1ab_2 conda-forge
colorama 0.4.6 pyhd8ed1ab_0 conda-forge
conda 23.1.0 py310h4c7bcd0_0 conda-forge
conda-lock 1.4.0 pyhd8ed1ab_2 conda-forge
conda-package-handling 2.0.2 pyh38be061_0 conda-forge
conda-package-streaming 0.7.0 pyhd8ed1ab_1 conda-forge
crashtest 0.4.1 pyhd8ed1ab_0 conda-forge
cryptography 39.0.1 py310he4ba0b1_0 conda-forge
dbus 1.13.6 h12b9eeb_3 conda-forge
distlib 0.3.6 pyhd8ed1ab_0 conda-forge
ensureconda 1.4.3 pyhd8ed1ab_0 conda-forge
expat 2.5.0 ha18d298_0 conda-forge
filelock 3.10.3 pyhd8ed1ab_0 conda-forge
fmt 9.1.0 hdd96247_0 conda-forge
gettext 0.21.1 ha18d298_0 conda-forge
html5lib 1.1 pyh9f0ad1d_0 conda-forge
icu 70.1 ha18d298_0 conda-forge
idna 3.4 pyhd8ed1ab_0 conda-forge
importlib-metadata 6.1.0 pyha770c72_0 conda-forge
importlib_metadata 6.1.0 hd8ed1ab_0 conda-forge
jaraco.classes 3.2.3 pyhd8ed1ab_0 conda-forge
jeepney 0.8.0 pyhd8ed1ab_0 conda-forge
jinja2 3.1.2 pyhd8ed1ab_1 conda-forge
keyring 23.13.1 py310h4c7bcd0_0 conda-forge
keyutils 1.6.1 h4e544f5_0 conda-forge
krb5 1.20.1 h113d92e_0 conda-forge
ld_impl_linux-aarch64 2.40 h2d8c526_0 conda-forge
libarchive 3.6.2 hc81d4a0_0 conda-forge
libcurl 7.88.1 h6ad7c7a_1 conda-forge
libedit 3.1.20191231 he28a2e2_2 conda-forge
libev 4.33 h516909a_1 conda-forge
libffi 3.4.2 h3557bc0_5 conda-forge
libgcc-ng 12.2.0 h607ecd0_19 conda-forge
libglib 2.74.1 h01e6fbd_1 conda-forge
libgomp 12.2.0 h607ecd0_19 conda-forge
libiconv 1.17 h9cdd2b7_0 conda-forge
libmamba 1.4.0 h4a4fd89_0 conda-forge
libmambapy 1.4.0 py310hbc2a718_0 conda-forge
libnghttp2 1.52.0 h250e5c5_0 conda-forge
libnsl 2.0.0 hf897c2e_0 conda-forge
libsolv 0.7.23 h3cb9bc8_0 conda-forge
libsqlite 3.40.0 hf9034f9_0 conda-forge
libssh2 1.10.0 he5a64b1_3 conda-forge
libstdcxx-ng 12.2.0 hc13a102_19 conda-forge
libuuid 2.32.1 hf897c2e_1000 conda-forge
libxml2 2.10.3 h249b6dd_0 conda-forge
libzlib 1.2.13 h4e544f5_4 conda-forge
lockfile 0.12.2 py_1 conda-forge
lz4-c 1.9.4 hd600fc2_0 conda-forge
lzo 2.10 h516909a_1000 conda-forge
mamba 1.4.0 py310hcbdc16a_0 conda-forge
markupsafe 2.1.2 py310h734f5e8_0 conda-forge
more-itertools 9.1.0 pyhd8ed1ab_0 conda-forge
msgpack-python 1.0.5 py310hb43b7d6_0 conda-forge
ncurses 6.3 headf329_1 conda-forge
openssl 3.1.0 hb4cce97_0 conda-forge
packaging 23.0 pyhd8ed1ab_0 conda-forge
pastel 0.2.1 pyhd8ed1ab_0 conda-forge
pcre2 10.40 he7b27c6_0 conda-forge
pip 23.0 pyhd8ed1ab_0 conda-forge
pkginfo 1.9.6 pyhd8ed1ab_0 conda-forge
platformdirs 3.1.1 pyhd8ed1ab_0 conda-forge
pluggy 1.0.0 pyhd8ed1ab_5 conda-forge
pybind11-abi 4 hd8ed1ab_3 conda-forge
pycosat 0.6.4 py310h761cc84_1 conda-forge
pycparser 2.21 pyhd8ed1ab_0 conda-forge
pydantic 1.10.7 py310hb89b984_0 conda-forge
pylev 1.4.0 pyhd8ed1ab_0 conda-forge
pyopenssl 23.0.0 pyhd8ed1ab_0 conda-forge
pysocks 1.7.1 pyha2e5f31_6 conda-forge
python 3.10.9 ha43d526_0_cpython conda-forge
python_abi 3.10 3_cp310 conda-forge
pyyaml 6.0 py310h761cc84_5 conda-forge
readline 8.1.2 h38e3740_0 conda-forge
reproc 14.2.4 hb4cce97_0 conda-forge
reproc-cpp 14.2.4 hd600fc2_0 conda-forge
requests 2.28.2 pyhd8ed1ab_0 conda-forge
ruamel.yaml 0.17.21 py310h761cc84_2 conda-forge
ruamel.yaml.clib 0.2.7 py310hb89b984_1 conda-forge
secretstorage 3.3.3 py310hbbe02a8_1 conda-forge
setuptools 65.6.3 pyhd8ed1ab_0 conda-forge
six 1.16.0 pyh6c4a22f_0 conda-forge
tk 8.6.12 hd8af866_0 conda-forge
tomli 2.0.1 pyhd8ed1ab_0 conda-forge
tomlkit 0.11.6 pyha770c72_0 conda-forge
toolz 0.12.0 pyhd8ed1ab_0 conda-forge
tqdm 4.64.1 pyhd8ed1ab_0 conda-forge
typing 3.10.0.0 pyhd8ed1ab_0 conda-forge
typing-extensions 4.5.0 hd8ed1ab_0 conda-forge
typing_extensions 4.5.0 pyha770c72_0 conda-forge
tzdata 2022g h191b570_0 conda-forge
urllib3 1.26.14 pyhd8ed1ab_0 conda-forge
virtualenv 20.21.0 pyhd8ed1ab_0 conda-forge
webencodings 0.5.1 py_1 conda-forge
wheel 0.38.4 pyhd8ed1ab_0 conda-forge
xz 5.2.6 h9cdd2b7_0 conda-forge
yaml 0.2.5 hf897c2e_2 conda-forge
yaml-cpp 0.7.0 h4de3ea5_2 conda-forge
zipp 3.15.0 pyhd8ed1ab_0 conda-forge
zstandard 0.19.0 py310hde4b81c_1 conda-forge
zstd 1.5.2 h44f6412_6 conda-forge
```
Reproducer: Inside |
|
Does it still fail if only conda, and not mamba is being used? |
|
It solves just fine with Conda. |
|
It also seems to solve fine with the libmamba-solver. |
I think this issue here is solved with conda 23.3.0 |
weiji14
added a commit
to weiji14/pangeo-docker-images
that referenced
this issue
May 13, 2023
The condalock KeyError issue due to conda 22.11.1 reported in pangeo-data#417 should have been fixed in conda 23.3.0 according to conda/conda-lock#292 (comment).
scottyhq
pushed a commit
to pangeo-data/pangeo-docker-images
that referenced
this issue
May 18, 2023
* Pin minimum conda to 23.3.0 The condalock KeyError issue due to conda 22.11.1 reported in #417 should have been fixed in conda 23.3.0 according to conda/conda-lock#292 (comment). * [condalock-command] autogenerated conda-lock files --------- Co-authored-by: pangeo-bot <pangeo-bot@users.noreply.github.com>
|
@scottyhq can you confirm and close? |
|
Note that there is one remaining trace of known screwy Conda interactions related to solving on That said, I expect that this has been solved for |
5 tasks
|
This should be fixed if you're using the latest version of Conda. Ref: sagemath/sage#35986 (comment) |
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I noticed conda-lock CI jobs failing recently, which appears to be due to the latest
conda=22.11release from last week since I've confirmed that conda22.9.0still works as expected.With a fresh conda-lock 1.2.1 environment (in which conda=22.11.1 gets installed) there is the following error:
You can reproduce this with the following:
The text was updated successfully, but these errors were encountered: