antsPyRegistrationStability

Requirements

ANTs ANTsPy c3d

Data

• fixed_slice_2d.nii.gz - from tpl-MNI152NLin2009bAsym T1w image
• moving_slice_2d.nii.gz - from Lüsebrink et al, sub-01_avg-04_T1w.nii.gz, downsampled to 0.5mm (source)

Script

run_reg.sh - Repeats the same registration in different ways. Output is a stack of images representing each mode of execution (under output/stacks):

stack_cmd.nii.gz - running antsRegistrationSyN.sh stack_loop.nii.gz - running Python ants.registration in a for loop stack_noloop.nii.gz - running Python ants.registration in independent calls

Similarity is computed with CC and output under similarity/.