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jtschwar authored Sep 7, 2024
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## Instructions for Use

Detailed instructions for using DeepFindET are provided in the `tutorials/` folder. These tutorials include jupyter notebooks with comments that guide you through the usage of the package with a synthetic dataset available on the CryoET-Dataportal - including the available command-line options. For example, to run the target generation script:
Detailed instructions for using DeepFindET are provided in the `tutorials/` folder. These tutorials include jupyter notebooks with comments that guide you through the usage of the package with a synthetic dataset available on the [CryoET-Dataportal](https://cryoetdataportal.czscience.com/datasets/10439?dataset_id=10439) - including the available command-line options. For example, to run the target generation script:

`step1 create --config config_10007.json --target ribosome,9 --seg-target membrane --voxel-size 7.84 --tomogram-algorithm wbp --out-name remotetargets`

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