Improve sampling from GP predictive posteriors. #507
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| # This workflow will install Python dependencies, run tests and lint with a variety of Python versions | |
| # For more information see: https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions | |
| name: Run Test Suite | |
| on: | |
| push: | |
| branches: [ master ] | |
| pull_request: | |
| branches: [ master ] | |
| workflow_call: | |
| jobs: | |
| run_linter: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Set up Python | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: "3.8" | |
| - name: Install dependencies | |
| run: | | |
| pip install flake8==4.0.1 flake8-print==4.0.0 pre-commit | |
| pre-commit install | |
| - name: Run linting | |
| run: | | |
| flake8 | |
| - name: Run pre-commit checks | |
| # skipping flake8 here (run separatey above b/c pre-commit does not include flake8-print) | |
| run: | | |
| SKIP=flake8 pre-commit run --files test/**/*.py gpytorch/**/*.py | |
| - name: Upload coverage reports to Codecov | |
| uses: codecov/codecov-action@v3 | |
| run_unit_tests: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| pytorch-version: ["master", "stable"] | |
| extras: ["with-extras", "no-extras"] | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Set up Python | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: "3.8" | |
| - name: Install dependencies | |
| run: | | |
| if [[ ${{ matrix.pytorch-version }} = "master" ]]; then | |
| pip install --pre torch -f https://download.pytorch.org/whl/nightly/cpu/torch_nightly.html; | |
| else | |
| pip install torch==1.11+cpu -f https://download.pytorch.org/whl/torch_stable.html; | |
| fi | |
| pip install -e . | |
| if [[ ${{ matrix.extras }} == "with-extras" ]]; then | |
| pip install "pyro-ppl>=1.8"; | |
| pip install pykeops; | |
| pip install faiss-cpu; # Unofficial pip release: https://pypi.org/project/faiss-cpu/#history | |
| fi | |
| - name: Run unit tests | |
| run: | | |
| python -m unittest discover | |
| run_examples: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Set up Python | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: "3.8" | |
| - name: Install dependencies | |
| run: | | |
| pip install torch==1.11+cpu -f https://download.pytorch.org/whl/torch_stable.html | |
| pip install pytest nbval jupyter tqdm matplotlib torchvision scipy | |
| pip install -e . | |
| pip install "pyro-ppl>=1.8"; | |
| pip install pykeops; | |
| pip install faiss-cpu; # Unofficial pip release: https://pypi.org/project/faiss-cpu/#history | |
| - name: Run example notebooks | |
| run: | | |
| grep -l smoke_test examples/**/*.ipynb | xargs grep -L 'smoke_test = False' | CI=true xargs pytest --nbval-lax --current-env |