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24 Open 43 Closed
24 Open 43 Closed
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Issues list

Issue with Fisher p-values
#73 opened Dec 18, 2024 by Myxwell
Detecting somatic SNPs with VAF=1
#71 opened Nov 14, 2024 by Swap90
2
Failure of installing pybedtools and rpy2
#70 opened Nov 7, 2024 by LiuCanidk
1
Fig6 plot mutation data
#69 opened Nov 7, 2024 by seoyounglee6445
Plotting 96 trinucleotide mutation count
#67 opened Oct 4, 2024 by hl-xue
Step4.2 fails to output any variants from scATACseq data
#66 opened Oct 2, 2024 by archieandrews10
5
How to estimate single-cell mutational burdens
#65 opened Sep 18, 2024 by xyzheng123
3
Issue with betabinomial estimation?
#59 opened Jul 9, 2024 by danieljrichard
1
The problem of analysing single-cell data from multiple tissues of the same individual
#58 opened May 18, 2024 by zhoudreames
1
If the Scomatic could provide the variant allele frequency of unique cell
#56 opened Apr 25, 2024 by luhuan93
how does input the tsv file to MutationalPatterns
#55 opened Apr 13, 2024 by dipingxian431
How to remove the influence of different cell numbers
#54 opened Mar 22, 2024 by xinghua1001
Understanding step 4.2 variant filters
#53 opened Mar 1, 2024 by bkinnersley
1
How does SingleCellGenotype.py work and what does it mean if substantial number of cell have different expected and observed cell types?
#52 opened Feb 27, 2024 by prakashraaz
Mutational Burden Calculation
#51 opened Feb 23, 2024 by JakeJackson22
minimal number of cells required for each cell type
#50 opened Feb 21, 2024 by rosaranli
run SComatic with not FACS-sorted data
#49 opened Feb 12, 2024 by giorgiagandolfi
Issue while generating a custom PoN file
#48 opened Feb 6, 2024 by Swap90
2
Very low number of matched variants when comparing known SNVs from several studies with the results obtained by SComatic when applied to the same data
#45 opened Jan 8, 2024 by FranSoriano
4
How to separate normal and cancer cells from the same cell type?
#44 opened Nov 29, 2023 by cv55
Two questions; about 'Cell_type_noise' filter and MT mutation calling
#41 opened Nov 24, 2023 by leehs96
1
SComatic with a single cell type but with germline reference
#40 opened Nov 22, 2023 by northerngasc
Do I need estimate new Beta binomial parameters for each sample? Another: according to somatic mutation in epi cells select cancer cell
#36 opened Oct 31, 2023 by gloriafight
How to run the tool on multiple samples from the same patient
#34 opened Oct 20, 2023 by MigleMi
ProTip! Follow long discussions with comments:>50.