CBG-3966: [3.1.9 backport] fix incorrect runtime config after conflict error on collection update #6924
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CBG-3966 + CBG-4022
Cherry pick of CBG-3817 then follow up of CBG-3994
Integration Tests
GSI=true,xattrs=truehttps://jenkins.sgwdev.com/job/SyncGateway-Integration/2543/