update docs #256
Workflow file for this run
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| name: build | |
| on: [push, pull_request] | |
| jobs: | |
| build: | |
| if: ${{ !contains(github.event.head_commit.message, '[ci skip]') }} | |
| runs-on: ubuntu-latest | |
| name: ${{ matrix.config.image }}:${{ matrix.config.tag }} | |
| container: | |
| image: ${{ matrix.config.image }}:${{ matrix.config.tag }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| config: | |
| - {image: 'fedora', tag: 'latest'} | |
| - {image: 'debian', tag: 'latest'} | |
| - {image: 'ubuntu', tag: 'latest'} | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }} | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Install dependencies (Fedora) | |
| if: ${{ matrix.config.image == 'fedora' }} | |
| run: | | |
| echo "install_weak_deps=False" >> /etc/dnf/dnf.conf | |
| dnf install -y R-core-devel devscripts-checkbashisms python3-dnf \ | |
| systemd python3-gobject python3-dbus dbus-daemon | |
| - name: Install dependencies (Debian, Ubuntu) | |
| if: ${{ matrix.config.image != 'fedora' }} | |
| env: | |
| DEBIAN_FRONTEND: noninteractive | |
| run: | | |
| apt update && apt install -y --no-install-recommends \ | |
| r-base-core devscripts python3-apt \ | |
| python3-gi python3-dbus && apt install -y systemd dbus-daemon | |
| - name: Check | |
| env: | |
| _R_CHECK_CRAN_INCOMING_REMOTE_: false | |
| run: | | |
| export LANG=$(locale -a | grep utf8 | head -n1) | |
| Rscript -e 'install.packages("tinytest", repos="https://cran.r-project.org")' | |
| R CMD build . && mkdir check | |
| R CMD check bspm_*.tar.gz --no-manual -o check | |
| - name: Upload check results | |
| if: ${{ failure() }} | |
| uses: actions/upload-artifact@master | |
| with: | |
| name: r-${{ matrix.config.image }}-${{ matrix.config.tag }}-results | |
| path: check | |
| - name: Test coverage | |
| if: ${{ success() && matrix.config.image == 'fedora' }} | |
| run: | | |
| dnf -y install R-covr | |
| Rscript -e 'covr::codecov()' | |
| r2u: | |
| needs: build | |
| name: r2u tests | |
| runs-on: ubuntu-latest | |
| container: | |
| image: rocker/r2u:jammy | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Install development version | |
| run: R CMD INSTALL . | |
| - name: Run tests | |
| run: ./tests/r2u.sh |