add indentation to glossary definitions

docs/source/glossary.md

@@ -4,191 +4,154 @@ A glossary of terms used with BMI.
 
 :::{glossary}
 \$
-
-> The default shell prompt.
+    The default shell prompt.
 
 Anaconda
-
-> A Python distribution that includes libraries for scientific
-> computing and a package manager. See
-> <https://www.anaconda.com/distribution> for more information.
+    A Python distribution that includes libraries for scientific
+    computing and a package manager. See
+    <https://www.anaconda.com/distribution> for more information.
 
 Basic Model Interface
-
-> A set a functions that are used to interact with and control a
-> model. See <https://bmi.readthedocs.io> for more information.
+    A set a functions that are used to interact with and control a model. See <https://bmi.readthedocs.io> for more information.
 
 BMI
-
-> See {term}`Basic Model Interface`.
+    See {term}`Basic Model Interface`.
 
 Community Surface Dynamics Modeling System
-
-> CSDMS is an NSF-funded program that seeks to transform the
-> science and practice of earth-surface dynamics modeling. For
-> more information, visit <https://csdms.colorado.edu>.
+    CSDMS is an NSF-funded program that seeks to transform the
+    science and practice of earth-surface dynamics modeling. For
+    more information, visit <https://csdms.colorado.edu>.
 
 class
-
-> A program that acts as a template for creating
-> {term}`objects<object>`.
+    A program that acts as a template for creating
+    {term}`objects<object>`.
 
 conda
-
-> The package manager for {term}`Anaconda`. Also an informal name
-> for an Anaconda installation.
+    The package manager for {term}`Anaconda`. Also an informal name
+    for an Anaconda installation.
 
 conda-forge
-
-> A collection of community-built packages distributed by
-> {term}`Anaconda`. See <https://conda-forge.org>.
+    A collection of community-built packages distributed by
+    {term}`Anaconda`. See <https://conda-forge.org>.
 
 conda environment
-
-> A {term}`conda` sub-installation that isolates a group of
-> packages from the main conda installation.
+    A {term}`conda` sub-installation that isolates a group of
+    packages from the main conda installation.
 
 configuration file
-
-> A file that contains information, including initial values of
-> parameters, for setting up a {term}`model`.
+    A file that contains information, including initial values of
+    parameters, for setting up a {term}`model`.
 
 coupling
-
-> See {term}`model coupling`.
+    See {term}`model coupling`.
 
 CSDMS
-
-> See {term}`Community Surface Dynamics Modeling System`.
+    See {term}`Community Surface Dynamics Modeling System`.
 
 CSDMS Workbench
-
-> An integrated system of software tools, technologies, and
-> standards for building and coupling models. See
-> <https://csdms.colorado.edu/wiki/Workbench> for more information.
+    An integrated system of software tools, technologies, and
+    standards for building and coupling models. See
+    <https://csdms.colorado.edu/wiki/Workbench> for more information.
 
 data
-
-> Information held by an {term}`object`.
+    Information held by an {term}`object`.
 
 edge
-
-> A line or curve bounded by two {term}`nodes <node>`.
+    A line or curve bounded by two {term}`nodes <node>`.
 
 exchange item
-
-> A variable that a model with a BMI produces or consumes.
-> Exchange items are public, not internal variables in the
-> model. Exchange items should use {term}`Standard Names`.
+    A variable that a model with a BMI produces or consumes.
+    Exchange items are public, not internal variables in the
+    model. Exchange items should use {term}`Standard Names`.
 
 face
-
-> A plane or surface enclosed by a set of {term}`edges <edge>`. In
-> a 2D horizontal application one may consider the word "polygon",
-> but in the hierarchy of elements the term "face" is most common.
-> See also {term}`node`.
+    A plane or surface enclosed by a set of {term}`edges <edge>`. In
+    a 2D horizontal application one may consider the word "polygon",
+    but in the hierarchy of elements the term "face" is most common.
+    See also {term}`node`.
 
 grid
-
-> A representation of a larger spatial domain by smaller discrete
-> cells. See {ref}`model_grids` and {ref}`references`, as well as
-> terms {term}`node`, {term}`edge`, and {term}`face`.
+    A representation of a larger spatial domain by smaller discrete
+    cells. See {ref}`model-grids` and {ref}`references`, as well as
+    terms {term}`node`, {term}`edge`, and {term}`face`.
 
 grid identifier
-
-> A unique object that labels (identifies) a model grid. Grid
-> identifiers are integers, starting at zero. Often abbreviated
-> "grid id". They're obtained through the {ref}`get_var_grid`
-> function.
+    A unique object that labels (identifies) a model grid. Grid
+    identifiers are integers, starting at zero. Often abbreviated
+    "grid id". They're obtained through the {ref}`get-var-grid`
+    function.
 
 grid node
-
-> See {term}`node`.
+    See {term}`node`.
 
 import
-
-> The process of bringing code from a Python {term}`module` into
-> another module or into an interactive Python session.
+    The process of bringing code from a Python {term}`module` into
+    another module or into an interactive Python session.
 
 instance
-
-> See {term}`object`.
+    See {term}`object`.
 
 method
-
-> Programs that act upon the {term}`data` of an {term}`object`.
+    Programs that act upon the {term}`data` of an {term}`object`.
 
 model
-
-> A computer program that attempts to describe a physical process
-> with mathematical relationships that evolve over time and are
-> solved numerically. For more information, see, for example,
-> <https://en.wikipedia.org/wiki/Numerical_modeling_(geology>).
+    A computer program that attempts to describe a physical process
+    with mathematical relationships that evolve over time and are
+    solved numerically. For more information, see, for example,
+    <https://en.wikipedia.org/wiki/Numerical_modeling_(geology>).
 
 model configuration file
-
-> A file, usually in a text-based format, that lists the tunable
-> parameters of a model and supplies their initial values.
+    A file, usually in a text-based format, that lists the tunable
+    parameters of a model and supplies their initial values.
 
 model coupling
-
-> Models are *coupled* when they exchange inputs and outputs,
-> often at the resolution of individual time steps. *One-way
-> coupling* occurs when the outputs from one model are used as
-> inputs to another model. *Two-way coupling* is when outputs from
-> one model are used as inputs for another model, which in turn
-> supplies its outputs to the first model as inputs, producing a
-> feedback.
+    Models are *coupled* when they exchange inputs and outputs,
+    often at the resolution of individual time steps. *One-way
+    coupling* occurs when the outputs from one model are used as
+    inputs to another model. *Two-way coupling* is when outputs from
+    one model are used as inputs for another model, which in turn
+    supplies its outputs to the first model as inputs, producing a
+    feedback.
 
 module
-
-> A file (with the `.py` extension) that contains Python code.
+    A file (with the `.py` extension) that contains Python code.
 
 node
-
-> A point that has a coordinate pair or triplet: the most basic
-> element of a grid. Variable values are typically calculated at
-> nodes. See also {term}`face` and {term}`edge`.
+    A point that has a coordinate pair or triplet: the most basic
+    element of a grid. Variable values are typically calculated at
+    nodes. See also {term}`face` and {term}`edge`.
 
 NumPy
-
-> A Python library that provides arrays. Outputs from *pymt* are
-> NumPy arrays. See also <https://numpy.org>.
+    A Python library that provides arrays. Outputs from *pymt* are
+    NumPy arrays. See also <https://numpy.org>.
 
 object
-
-> A variable that is a concrete example of a
-> {term}`class`. Objects have {term}`data` and
-> {term}`methods<method>` that act upon those data.
+    A variable that is a concrete example of a
+    {term}`class`. Objects have {term}`data` and
+    {term}`methods<method>` that act upon those data.
 
 rank
-
-> The number of dimensions of a model grid. A scalar has rank 0, a
-> vector has rank 1, a rectilinear grid has rank 2, etc.
+    The number of dimensions of a model grid. A scalar has rank 0, a
+    vector has rank 1, a rectilinear grid has rank 2, etc.
 
 refactor
-
-> The act of modifying the internals of a program without changing
-> the external behaviors of the program. Refactoring is often done
-> to clean up code and improve its performance.
+    The act of modifying the internals of a program without changing
+    the external behaviors of the program. Refactoring is often done
+    to clean up code and improve its performance.
 
 Scientific Interface Definition Language
-
-> A specification language for describing software interfaces to
-> scientific model codes. See {ref}`references`.
+    A specification language for describing software interfaces to
+    scientific model codes. See {ref}`references`.
 
 SIDL
-
-> See {term}`Scientific Interface Definition Language`.
+    See {term}`Scientific Interface Definition Language`.
 
 Standard Names
-
-> A semantic mediation technology developed at CSDMS for precisely
-> matching variable names between models. For more information,
-> see <https://csdms.colorado.edu/wiki/CSDMS_Standard_Names>.
+    A semantic mediation technology developed at CSDMS for precisely
+    matching variable names between models. For more information,
+    see <https://csdms.colorado.edu/wiki/CSDMS_Standard_Names>.
 
 unit test
-
-> A program that isolates and runs a section (a unit) of source
-> code to ensure that it produces an expected result.
+    A program that isolates and runs a section (a unit) of source
+    code to ensure that it produces an expected result.
 :::