doc: fixed badge in README #69
Workflow file for this run
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| name: Build pyquasoare | |
| on: [push] | |
| jobs: | |
| build-linux: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| max-parallel: 5 | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Set up Python 3.10 | |
| uses: actions/setup-python@v3 | |
| with: | |
| python-version: '3.10' | |
| - name: Add conda to system path | |
| run: | | |
| # $CONDA is an environment variable pointing to the root of the miniconda directory | |
| echo $CONDA/bin >> $GITHUB_PATH | |
| - name: Create conda environment if needed | |
| run: | | |
| source $CONDA/etc/profile.d/conda.sh | |
| conda env create -f env_pyquasoare.yml | |
| - name : Install hydrodiy package in conda env | |
| run: | | |
| source $CONDA/etc/profile.d/conda.sh | |
| conda activate env_pyquasoare | |
| cd $GITHUB_WORKSPACE | |
| mkdir -p src | |
| cd src | |
| git clone https://github.com/csiro-hydroinformatics/hydrodiy.git | |
| cd hydrodiy | |
| echo "--- hydrodiy install : located in $PWD ---" | |
| pip install -e . | |
| - name : Install pygme package in conda env | |
| run: | | |
| source $CONDA/etc/profile.d/conda.sh | |
| conda activate env_pyquasoare | |
| cd $GITHUB_WORKSPACE | |
| mkdir -p src | |
| cd src | |
| git clone https://github.com/csiro-hydroinformatics/pygme.git | |
| cd pygme | |
| echo "--- pygme install : located in $PWD ---" | |
| pip install -e . | |
| - name : Install pyquasoare package in conda env | |
| run: | | |
| source $CONDA/etc/profile.d/conda.sh | |
| conda activate env_pyquasoare | |
| cd $GITHUB_WORKSPACE | |
| echo "--- pyquasoare install : located in $PWD ---" | |
| pip install -e . | |
| - name: Lint with flake8 | |
| run: | | |
| source $CONDA/etc/profile.d/conda.sh | |
| conda activate env_pyquasoare | |
| cd $GITHUB_WORKSPACE | |
| flake8 src/pyquasoare | |
| - name: Run tests | |
| run: | | |
| source $CONDA/etc/profile.d/conda.sh | |
| conda activate env_pyquasoare | |
| cd $GITHUB_WORKSPACE | |
| echo "--- pyquasoare test : located in $PWD ---" | |
| pytest --ignore=src/pygme --ignore=src/hydrodiy --doctest-modules src | |
| pytest --ignore=src/pygme --ignore=src/hydrodiy --ntry=100 --cov=pyquasoare --cov-report=xml --cov-report=html -cov-report=missing-term tests | |
| - name: Parse coverage report and create badge | |
| run: | | |
| source $CONDA/etc/profile.d/conda.sh | |
| conda activate env_pyquasoare | |
| python -c "import xml.etree.ElementTree as ET; from anybadge import Badge; cov = float(ET.parse('coverage.xml').getroot().get('line-rate')) * 100; covbadge = Badge('Coverage', value=f'{cov:0.0f}%', thresholds={60:'red', 70:'orange', 80:'lightgreen', 90:'green'}); covbadge.write_badge('coverage_badge.svg', True)" | |
| - name: Update gist badge | |
| run: | | |
| sed 's/\"/\\\"/g' coverage_badge.svg > coverage_badge.txt | |
| echo "{\"files\": {\"coverage_badge.svg\": {\"content\": \"$(cat coverage_badge.txt)\"}}}" > coverage_badge.json | |
| curl -X PATCH -H "Authorization: token ${{ secrets.COVERAGE_GIST_TOKEN }}" \ | |
| -d @coverage_badge.json \ | |
| "https://api.github.com/gists/${{ secrets.COVERAGE_GIST_ID }}" | |
| - name: Upload pytest test log files | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: pytest-logs | |
| path: tests/*.log | |
| - name: Upload coverage report | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: pytest-coverage | |
| path: htmlcov/*.* | |
| - name: Run examples | |
| run: | | |
| source $CONDA/etc/profile.d/conda.sh | |
| conda activate env_pyquasoare | |
| cd $GITHUB_WORKSPACE | |
| echo "--- pyquasoare examples : located in $PWD ---" | |
| python examples/run_all_examples.py | |
| cd examples/quadroute | |
| ./compile_unix.sh | |
| cd ../vicmod | |
| ./compile_unix.sh | |