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  1. PepPre.jl PepPre.jl Public

    Promote peptide identification using accurate and comprehensive precursors. https://doi.org/10.1021/acs.jproteome.3c00293

    Julia 4

  2. TargetWizard.jl TargetWizard.jl Public

    Targeted Mass Spectrometry Processing Utilities: preparation, quality control, analysis, visualization...

    Julia

  3. ThermoRawRead.cs ThermoRawRead.cs Public

    ThermoRawRead is used to extract mass spectrometry data from RAW files of Thermo Fisher instruments.

    C#

  4. MgfRead.py MgfRead.py Public

    Utility to convert MGF files exported by msConvert or Bruker to the compatible format for pFind/pLink.

    Python

  5. averagine.ctarn.io averagine.ctarn.io Public

    Online utility to visualize isotope pattern of peptide based on averagine model.

    HTML

  6. PepFeat.jl PepFeat.jl Public archive

    (merging into PepPre) PepFeat is used to detect peptide features from LC-MS map, and align peptide features of multiple runs (to measure retention time variation).

    Python