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13 Open 115 Closed
13 Open 115 Closed
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Issues list

fgsea hangs forever for highly enriched pathways in the presence of repeated high scored genes
#151 opened Apr 4, 2024 by guidohooiveld
9
Gene filtering for FGSEA
#143 opened Nov 15, 2023 by SirKuikka
Prepare for upcoming Seurat v5 release
#142 opened Oct 3, 2023 by Gesmira
Obtain per-sample expression value for a gene set
#137 opened Jul 12, 2023 by PatrickMaclean
1
Question: Understanding discrepant results when using different ranking approaches and algorithmic parameters question
#128 opened Feb 11, 2023 by atakanekiz
2
Question: Visium Data and pulling out cells with high GO enrichment for a given pathway question
#127 opened Nov 20, 2022 by DirtyHarry80
8
Use outside of R
#121 opened Oct 19, 2022 by maxkfranz
4
Citation
#116 opened Jul 21, 2022 by pstew
3
fgsea hangs with nperm=1001, but not 1000 invalid
#93 opened May 11, 2021 by assaron
6
Suggestion: multi-thread collapsePathways
#84 opened Nov 2, 2020 by Horokhovskyi
1
plotEnrichment ranks labels
#58 opened Dec 7, 2019 by igordot
2
scRNA-seq: how to create the Ranked list? question
#50 opened Jul 24, 2019 by asmariyaz23
17
Preranked metric ties enhancement
#18 opened Feb 6, 2018 by ToledoEM
@assaron
4
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