How to run docker of fastqc

Fastq files quality control overview

This repository contains a Dockerfile to build a Docker image that runs FastQC and MultiQC, a entrypoint.sh script serves as the entrypoint for the Docker image, and GitHub Actions workflow configurations for automated building, pushing, and signing of the Docker image.

Usage

Run manually with cmd line

docker run -it --rm \
  -v ./fastq:/mnt/in \
  ghcr.io/cuhk-haosun/code-docker-fastqc:latest

Run via github action

Simply fill in the forms listed in the github action