MicrobeMod 1.0.6

This version added a new HMM to the database that covers a Type IV-like methyl directed restriction enzyme not captured in the previous database.

MicrobeMod 1.0.5

Minor release fixing two bugs:

1. -a does not have to match -o.
2. Output completes with empty file if there are no RM genes detected by BLAST.

MicrobeMod 1.0.4

Brief change log:

1. You can now specify a pre-existing prodigal FAA file as input with the -a parameter to avoid rerunning prodigal.
2. You can now specify an output directory with the -d parameter in response to #24
3. Fixed bug related to issue #22
4. Tested with Dorado 0.7 and Modkit 0.3 and updated README to reflect this

If you encounter an issue with this release, please let me know asap so I can fix!

MicrobeMod 1.0.3

Version 1.0.3 updates:

1. Compatible with 4mC and 5hmC modified base calling models.
2. annotate_rm now optionally accepts a GenBank file.
3. Created Docker image and updated conda install instructions, as well as other additions to the README.

MicrobeMod 1.0.2

MicrobeMod version 1.0.2, the version available upon release and described in the preprint.