Bug: Pytest fails during test collection when there is an error in test_DeepProfiler_processing.py

[kenibrewer]

Example code with output

(pycytominer-py3.10) @kenibrewer ➜ /workspaces/pycytominer (feature/setup-pyproject-toml) $ pytest
===================================================================== test session starts =====================================================================
platform linux -- Python 3.10.12, pytest-7.4.0, pluggy-1.2.0
rootdir: /workspaces/pycytominer
configfile: pyproject.toml
testpaths: tests
collected 147 items                                                                                                                                           

tests/test_aggregate.py .........                                                                                                                       [  6%]
tests/test_annotate.py ....                                                                                                                             [  8%]
tests/test_consensus.py ..                                                                                                                              [ 10%]
tests/test_feature_select.py .........                                                                                                                  [ 16%]
tests/test_normalize.py ...........                                                                                                                     [ 23%]
tests/test_cyto_utils/test_DeepProfiler_processing.py Terminated

Issue description

Pytest was originally failing during test collection. Deleting test files in groups finally let me isolate tests/test_cyto_utils/test_DeepProfiler_processing.py as the problematic file (Permalink). A substantial amount of processing for DeepProfiler occurs outside of functions. When an error is encountered during these functions pytest fails during test collection with no informative error messages.

Expected behavior

Pytest should report errors that are encountered while preparing data package to run tests for py

Additional information

It was suggested by @d33bs here that the code for generating the deepprofiler python package should be moved into a pytest fixture.

[kenibrewer]

I have updated this issue to represent the fact that there are two bugs that need to be dealt with separately. One for the fact that pytest fails during test collection. And another issue for the use of an large dataset for testing purposes that crashes on smaller machines.