Error: relocation "" can not be used when making a PIE object; recompile with -fPIE

[papaig]

Hi,

I tried to compile AreTomo2 based on the instruction provided in the README file with CUDA 12.0. I received this error during the compilation:
PatchAlign/GNormByStd2D.cu has been compiled.
/usr/bin/ld: /home/papai/software/AreTomo2/LibSrc/Lib/libmrcfile.a(CLoadExtHeader.o): relocation R_X86_64_32 against symbol __gxx_personality_v0@@CXXABI_1.3' can not be used when making a PIE object; recompile with -fPIE /usr/bin/ld: /home/papai/software/AreTomo2/LibSrc/Lib/libmrcfile.a(CSaveMainHeader.o): relocation R_X86_64_32 against symbol __gxx_personality_v0@@CXXABI_1.3' can not be used when making a PIE object; recompile with -fPIE
/usr/bin/ld: /home/papai/software/AreTomo2/LibSrc/Lib/libmrcfile.a(CLoadImage.o): relocation R_X86_64_32 against symbol __gxx_personality_v0@@CXXABI_1.3' can not be used when making a PIE object; recompile with -fPIE /usr/bin/ld: /home/papai/software/AreTomo2/LibSrc/Lib/libmrcfile.a(CLoadMrc.o): relocation R_X86_64_32 against symbol __gxx_personality_v0@@CXXABI_1.3' can not be used when making a PIE object; recompile with -fPIE
/usr/bin/ld: /home/papai/software/AreTomo2/LibSrc/Lib/libmrcfile.a(CSaveMrc.o): relocation R_X86_64_32 against symbol __gxx_personality_v0@@CXXABI_1.3' can not be used when making a PIE object; recompile with -fPIE /usr/bin/ld: /home/papai/software/AreTomo2/LibSrc/Lib/libutil.a(Util_FileName.o): relocation R_X86_64_32 against .rodata' can not be used when making a PIE object; recompile with -fPIE
/usr/bin/ld: /home/papai/software/AreTomo2/LibSrc/Lib/libutil.a(Util_String.o): relocation R_X86_64_32 against .rodata' can not be used when making a PIE object; recompile with -fPIE /usr/bin/ld: /home/papai/software/AreTomo2/LibSrc/Lib/libutil.a(Util_LinEqs.o): relocation R_X86_64_32 against .rodata' can not be used when making a PIE object; recompile with -fPIE
/usr/bin/ld: /home/papai/software/AreTomo2/LibSrc/Lib/libutil.a(Util_Powell.o): relocation R_X86_64_32 against symbol _ZTV11Util_Powell' can not be used when making a PIE object; recompile with -fPIE /usr/bin/ld: /home/papai/software/AreTomo2/LibSrc/Lib/libutil.a(Util_Thread.o): relocation R_X86_64_32 against symbol _ZTV11Util_Thread' can not be used when making a PIE object; recompile with -fPIE
collect2: error: ld returned 1 exit status
make: *** [makefile11:183: exe] Error 1
My GNU make version is 4.3, gcc version is 10.2.1.
I would be grateful if you could help me to resolve this issue.
Thank you in advance for your help!
Gabor

[Srichnew]

Hi there, I too had the same issue. Any help/advice you can give would be awesome!

Thank you,
Shane

[Vilax]

Dear @Srichnew

I had the same issue in gCTFfind. In the next post you can find a solution:

czimaginginstitute/GCtfFind#7

You only need to modify the makefile adding -lpthread -no-pie

I hope this helps

Best

[Srichnew]

[like] Rich-New, Shane Thomas reacted to your message:

…

________________________________ From: Vilax ***@***.***> Sent: Friday, March 15, 2024 2:15:18 PM To: czimaginginstitute/AreTomo2 ***@***.***> Cc: Rich-New, Shane Thomas ***@***.***>; Mention ***@***.***> Subject: Re: [czimaginginstitute/AreTomo2] Error: relocation "" can not be used when making a PIE object; recompile with -fPIE (Issue #14) Dear @Srichnew<https://github.com/Srichnew> I had the same issue in gCTFfind. In the next post you can find a solution: czimaginginstitute/GCtfFind#7<czimaginginstitute/GCtfFind#7> You only need to modify the makefile adding -lpthread -no-pie I hope this helps Best — Reply to this email directly, view it on GitHub<#14 (comment)>, or unsubscribe<https://github.com/notifications/unsubscribe-auth/A4EYE5NS3PWOH7T4JO2RP6DYYL67NAVCNFSM6AAAAABD2GJGKGVHI2DSMVQWIX3LMV43OSLTON2WKQ3PNVWWK3TUHMYTSOJZG43DCMZZGE>. You are receiving this because you were mentioned.Message ID: ***@***.***>