Skip to content

Commit

Permalink
get ready for next release
Browse files Browse the repository at this point in the history
  • Loading branch information
DanGrayson committed Jun 13, 2023
1 parent 78b1482 commit e08f5f1
Show file tree
Hide file tree
Showing 24 changed files with 514 additions and 375 deletions.
2 changes: 1 addition & 1 deletion M2/Macaulay2/packages/=distributed-packages
Original file line number Diff line number Diff line change
Expand Up @@ -255,4 +255,4 @@ PseudomonomialPrimaryDecomposition
PolyominoIdeals
MatchingFields
CellularResolutions
SagbiGbDetection
SagbiGbDetection
Original file line number Diff line number Diff line change
Expand Up @@ -102,6 +102,16 @@ The mixed volume of
is 3
yet we found 2 points
Attempting to find all 3 points via monodromy.
Found:2 solutions via monodromy
Found:3 solutions via monodromy
Found:3 solutions via monodromy
Found:3 solutions via monodromy
Found:3 solutions via monodromy
Found:3 solutions via monodromy
Found:3 solutions via monodromy
Found:3 solutions via monodromy
Found:3 solutions via monodromy
Found:3 solutions via monodromy
Monodromy recovery was successful
basicSolver: Computed 3 solutions

Expand Down
16 changes: 15 additions & 1 deletion M2/Macaulay2/packages/GraphicalModelsMLE.m2
Original file line number Diff line number Diff line change
Expand Up @@ -44,7 +44,21 @@ newPackage(
Headline => "maximum likelihood estimates for graphical statistical models",
Keywords => {"Algebraic Statistics"},
DebuggingMode => true,
PackageExports => {"GraphicalModels","Graphs","EigenSolver","NumericalAlgebraicGeometry","StatGraphs"}
PackageExports => {"GraphicalModels","Graphs","EigenSolver","NumericalAlgebraicGeometry","StatGraphs"},
Certification => {
"journal name" => "The Journal of Software for Algebra and Geometry",
"journal URI" => "http://j-sag.org/",
"article title" => "Computing maximum likelihood estimates for Gaussian graphical models with Macaulay2",
"acceptance date" => "14 March 2022",
"published article URI" => "https://msp.org/jsag/2022/12-1/p01.xhtml",
"published article DOI" => "10.2140/jsag.2022.12.1",
"published code URI" => "https://msp.org/jsag/2022/12-1/jsag-v12-n1-x01-GraphicalModelsMLE.zip",
"repository code URI" => "http://github.com/Macaulay2/M2/blob/master/M2/Macaulay2/packages/GraphicalModelsMLE.m2",
"release at publication" => "f0aaf5e74216283f022f7773bc1116f8de6b944b", -- git commit number in hex
"version at publication" => "1.0",
"volume number" => "12",
"volume URI" => "https://msp.org/jsag/2022/12-1/"
}
)
export {
"checkPD",
Expand Down
16 changes: 15 additions & 1 deletion M2/Macaulay2/packages/Jets.m2
Original file line number Diff line number Diff line change
Expand Up @@ -34,7 +34,21 @@ newPackage(
Headline => "compute jets of various algebraic, geometric and combinatorial objects",
PackageImports => {"SimpleDoc","EdgeIdeals"},
PackageExports => {"EdgeIdeals"},
DebuggingMode => false
DebuggingMode => false,
Certification => {
"journal name" => "The Journal of Software for Algebra and Geometry",
"journal URI" => "http://j-sag.org/",
"article title" => "Computing with jets",
"acceptance date" => "20 October 2022",
"published article URI" => "https://msp.org/jsag/2022/12-1/p06.xhtml",
"published article DOI" => "10.2140/jsag.2022.12.43",
"published code URI" => "https://msp.org/jsag/2022/12-1/jsag-v12-n1-x06-Jets.m2",
"repository code URI" => "http://github.com/Macaulay2/M2/blob/master/M2/Macaulay2/packages/Jets.m2",
"release at publication" => "b0d482205848caeda2616f4ed58be2a6783e88a2", -- git commit number in hex
"version at publication" => "1.1",
"volume number" => "12",
"volume URI" => "https://msp.org/jsag/2022/12-1/"
}
)


Expand Down
16 changes: 15 additions & 1 deletion M2/Macaulay2/packages/LinearTruncations.m2
Original file line number Diff line number Diff line change
Expand Up @@ -8,7 +8,21 @@ newPackage(
{Name => "Navid Nemati", Email => "Navid.Nemati@inria.fr"}},
Headline => "find the multigraded truncations that give linear resolutions",
PackageExports => {"Truncations", "TateOnProducts"},
DebuggingMode => false
DebuggingMode => false,
Certification => {
"journal name" => "The Journal of Software for Algebra and Geometry",
"journal URI" => "http://j-sag.org/",
"article title" => "Linear truncations package for Macaulay2",
"acceptance date" => "18 May 2022",
"published article URI" => "https://msp.org/jsag/2022/12-1/p02.xhtml",
"published article DOI" => "10.2140/jsag.2022.12.11",
"published code URI" => "https://msp.org/jsag/2022/12-1/jsag-v12-n1-x02-LinearTruncations.m2",
"repository code URI" => "http://github.com/Macaulay2/M2/blob/master/M2/Macaulay2/packages/LinearTruncations.m2",
"release at publication" => "c1b72330821054c17b07c574649d98ac577cb3af", -- git commit number in hex
"version at publication" => "1.0",
"volume number" => "12",
"volume URI" => "https://msp.org/jsag/2022/12-1/"
}
)

export{
Expand Down
40 changes: 40 additions & 0 deletions M2/Macaulay2/packages/Macaulay2Doc/changes.m2
Original file line number Diff line number Diff line change
Expand Up @@ -6,6 +6,7 @@ document {
Key => "changes to Macaulay2, by version",
Subnodes => {
TO "changes made for the next release",
TO "changes, 1.22",
TO "changes, 1.21",
TO "changes, 1.20",
TO "changes, 1.19.1",
Expand Down Expand Up @@ -44,6 +45,45 @@ document {
document {
Key => "changes, 1.22",
UL {
LI { "packages that have been published and certified:",
UL {
-- LI { star, " ", TO "::", ", a package by ... for ..., has been published." },
LI { star, " ", TO "GraphicalModelsMLE::GraphicalModelsMLE", ", a package by
Carlos Amendola, Luis David Garcia Puente, Roser Homs Pons, Olga Kuznetsova,
Harshit J Motwani, Elina Robeva, and David Swinarski, for maximum likelihood
estimates for graphical statistical models, has been published." },
LI { star, " ", TO "LinearTruncations::LinearTruncations", ", a package by Lauren Cranton Heller,
David Eisenbud, and Navid Nemati for finding multigraded truncations that give linear resolutions,
has been published."
},
LI { star, " ", TO "RationalMaps::RationalMaps", ", a package by Karl Schwede,
Daniel Smolkin, S. Hamid Hassanzadeh, and C. J. Bott, for working with rational maps, has been published." },
LI { star, " ", TO "PseudomonomialPrimaryDecomposition::PseudomonomialPrimaryDecomposition", ", a package by Alan
A. Veliz-Cuba for primary decomposition of square free pseudomonomial ideals, has been published."},
LI { star, " ", TO "NoetherianOperators::NoetherianOperators", ", a package by Robert Krone, Justin Chen,
Marc Harkonen, Yairon Cid-Ruiz, and Anton Leykin, for numerically computing local dual spaces,
Hilbert functions, and Noetherian operators, has been published." },
LI { star, " ", TO "Jets::Jets", ", a package by Federico Galetto and
Nicholas Iammarino, for computing jets of various algebraic, geometric and combinatorial objects, has been published." }
}
},
LI { "new packages:",
UL {
-- LI { TO "::", ", a package by ... for ..., has been added." },
LI { TO "HolonomicSystems::HolonomicSystems", ", a package by Mahrud Sayrafi, Christine Berkesch, Anton Leykin, and
Harrison Tsai for holonomic systems, has been added. The code was originally in the Dmodules package." },
LI { TO "BernsteinSato::BernsteinSato", ", a package by Anton Leykin and Harrison Tsai for Bernstein-Sato,
has been added. The code was originally in the Dmodules package." },
LI { TO "PolyominoIdeals::PolyominoIdeals", ", a package by Carmelo Cisto, Francesco Navarra, and Rizwan Jahangir for
binomial ideals of collections of cells, has been added." },
LI { TO "MatchingFields::MatchingFields", ", a package by Oliver Clarke for matching fields, has been added." },
LI { TO "CellularResolutions::CellularResolutions", ", a package by Jay Yang and Aleksandra Sobieska for
cellular resolutions of monomial ideals, has been added." },
LI { TO "SagbiGbDetection::SagbiGbDetection", ", a package by Viktoriia Borovik, Timothy Duff, and Elima Shehu for verifying
whether the given generators of an ideal form the Gr\"obner basis or whether the given generators of a finitely
generated subalgebra of a polynomial ring are the SAGBI basis, has been added." }
}
},
LI { "functionality added:",
UL {
LI { "A ", TO RingMap, " object may now be raised to the 0th power if its ", TO source, " and ", TO target, " agree." },
Expand Down
Original file line number Diff line number Diff line change
Expand Up @@ -332,7 +332,7 @@ i45 : E' = QQ[x,y,z,w,SkewCommutative=>true]

o45 = E'

o45 : PolynomialRing, 4 skew commutative variables
o45 : PolynomialRing, 4 skew commutative variable(s)

i46 : E = toNCRing E'
--Calling Bergman for NCGB calculation.
Expand Down Expand Up @@ -387,7 +387,7 @@ i54 : C'' = toM2Ring(C,SkewCommutative=>true)

o54 = C''

o54 : PolynomialRing, 4 skew commutative variables
o54 : PolynomialRing, 4 skew commutative variable(s)

i55 : y*x

Expand Down
Original file line number Diff line number Diff line change
Expand Up @@ -12,7 +12,7 @@ i2 : B = QQ[a,b,c,SkewCommutative=>true]

o2 = B

o2 : PolynomialRing, 3 skew commutative variables
o2 : PolynomialRing, 3 skew commutative variable(s)

i3 : f = ncMap(B,A,{a^3,b^2,a+b,a-b})

Expand Down
2 changes: 1 addition & 1 deletion M2/Macaulay2/packages/NCAlgebra/examples/_to__M2__Ring.out
Original file line number Diff line number Diff line change
Expand Up @@ -44,7 +44,7 @@ i7 : C = toM2Ring(A,SkewCommutative=>true)

o7 = C

o7 : PolynomialRing, 4 skew commutative variables
o7 : PolynomialRing, 4 skew commutative variable(s)

i8 : x*y-y*x

Expand Down
20 changes: 17 additions & 3 deletions M2/Macaulay2/packages/NoetherianOperators.m2
Original file line number Diff line number Diff line change
Expand Up @@ -20,11 +20,25 @@ newPackage(
PackageImports => {"PrimaryDecomposition"},
AuxiliaryFiles => false,
DebuggingMode => false,
Keywords => {"Numerical Algebraic Geometry", "Commutative Algebra"}
)
Keywords => {"Numerical Algebraic Geometry", "Commutative Algebra"},
Certification => {
"journal name" => "The Journal of Software for Algebra and Geometry",
"journal URI" => "http://j-sag.org/",
"article title" => "Noetherian operators in Macaulay2",
"acceptance date" => "26 September 2022",
"published article URI" => "https://msp.org/jsag/2022/12-1/p05.xhtml",
"published article DOI" => "10.2140/jsag.2022.12.33",
"published code URI" => "https://msp.org/jsag/2022/12-1/jsag-v12-n1-x05-NoetherianOperators.m2",
"repository code URI" => "http://github.com/Macaulay2/M2/blob/master/M2/Macaulay2/packages/NoetherianOperators.m2",
"release at publication" => "28faaabb38111c186c23ef6e6a3d487b0823390e", -- git commit number in hex
"version at publication" => "2.2.1",
"volume number" => "12",
"volume URI" => "https://msp.org/jsag/2022/12-1/"
}
)

debug NumericalLinearAlgebra

export {
"truncatedDual",
"zeroDimensionalDual",
Expand Down
Loading

0 comments on commit e08f5f1

Please sign in to comment.