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update oncogene/TSG source
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jharenza authored Sep 30, 2024
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Expand Up @@ -38,7 +38,8 @@ The fusion reference is a compilation of the annotations listed in the table bel
| pfamID | http://hgdownload.soe.ucsc.edu/goldenPath/hg38/database/pfamDesc.txt.gz | UCSC pfamID Description database |
| Domain Location | http://hgdownload.soe.ucsc.edu/goldenPath/hg38/database/ucscGenePfam.txt.gz | UCSC pfamID Description database |
| TCGA fusions | https://tumorfusions.org/PanCanFusV2/downloads/pancanfus.txt.gz | TumorFusions: an integrative resource for cancer-associated transcript fusions PMID: 29099951 |
| Oncogenes | http://www.bushmanlab.org/assets/doc/allOnco_Feb2017.tsv | www.bushmanlab.org |
| Oncogenes | OncoKB - last updated 20240704 | https://www.oncokb.org/cancer-genes |
| Tumor suppressor genes (TSGs) | OncoKB - last updated 20240704 | https://www.oncokb.org/cancer-genes |
| Tumor suppressor genes (TSGs) | https://bioinfo.uth.edu/TSGene/Human_TSGs.txt?csrt=5027697123997809089 | Tumor Suppressor Gene Database 2.0 PMIDs: 23066107, 26590405 |
| Kinases | http://kinase.com/human/kinome/tables/Kincat_Hsap.08.02.xls | The protein kinase complement of the human genome PMID: 12471243 |
| COSMIC genes | https://cancer.sanger.ac.uk/census | Catalogue of Somatic Mutations in Cancer |
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