Merge pull request #228 from stevendbrown/to_seqfeature_strand

move strand specification to FeatureLocation in `to_seqfeature`
daler · Apr 9, 2024 · cd01ff5 · cd01ff5
2 parents 32e48a1 + 71033c1
commit cd01ff5
Showing 1 changed file with 4 additions and 2 deletions.
diff --git a/gffutils/biopython_integration.py b/gffutils/biopython_integration.py
@@ -46,10 +46,12 @@ def to_seqfeature(feature):
     return SeqFeature(
         # Convert from GFF 1-based to standard Python 0-based indexing used by
         # BioPython
-        FeatureLocation(feature.start - 1, feature.stop),
+        FeatureLocation(
+            feature.start - 1,
+            feature.stop,
+            strand=_biopython_strand[feature.strand]),
         id=feature.id,
         type=feature.featuretype,
-        strand=_biopython_strand[feature.strand],
         qualifiers=qualifiers,
     )