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Correct a regression for a package with a specified set of included l…
…ibraries (#3825) Correct a regression for a package with a specified set of included libraries In 12d271a we change what libraries can count as a 'canonical library', such that when a set of libraries is specified with the 'include' option, any library not in the 'include' list is not canonical. This breaks a few things. The fix is to add all libraries to the `_allLibraries` field, not taking the 'include' list into consideration. Then when we decide what libraries are considered to be part of a package, we filter down to 'included' libraries.
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