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Issues list

IGD should warn the user that outputs already exist in the current directory enhancement New feature or request igd
#63 opened Dec 20, 2024 by donaldcampbelljr
Uniwig should warn the user that outputs already exist in the current directory enhancement New feature or request uniwig
#62 opened Dec 20, 2024 by donaldcampbelljr
Implement streaming for bed/narrowPeak to bw workflows enhancement New feature or request
#59 opened Dec 18, 2024 by donaldcampbelljr
if associated .bai does not exist, have uniwig create it (using noodles crate) enhancement New feature or request uniwig
#57 opened Dec 16, 2024 by donaldcampbelljr
Implement python bindings for uniwig uniwig
#55 opened Dec 12, 2024 by donaldcampbelljr
Implement python bindings for IGD igd
#54 opened Dec 12, 2024 by donaldcampbelljr
Double-tokenizing a RegionSet will result in no tokens bug Something isn't working
#42 opened Oct 26, 2024 by nleroy917
1
Rename uniwig brainstorming
#33 opened Oct 14, 2024 by donaldcampbelljr
Bypass filesystem with uniwig using fifos brainstorming uniwig
#32 opened Oct 10, 2024 by nsheff
1
Hierarchical universes and a tokenizer config brainstorming enhancement New feature or request
#25 opened Jun 7, 2024 by nleroy917
Tokenize all the things - genomic omni-model brainstorming
#19 opened May 18, 2024 by nleroy917
Python bindings wont build for linux aarch64 bug Something isn't working help wanted Extra attention is needed
#18 opened May 15, 2024 by nleroy917
10
Implement an AnnData tokenizer new tool Request to implement a new tool tokenizers Region tokenization
#14 opened Apr 19, 2024 by nleroy917
Inconsistent region numbers question Further information is requested
#10 opened Feb 15, 2024 by gtzheng
4
Implement a soft tokenizer enhancement New feature or request
#7 opened Dec 8, 2023 by nleroy917
@nleroy917
1
Tokenizers should sort universe files before creating region_to_id maps bug Something isn't working
#4 opened Dec 1, 2023 by nleroy917
@nleroy917
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