v0.12.0

[0.12.0] -- 2025-01-16

• Remove containers from build and docs (docker and singularity)
• update native install and bulker install docs
• update to the newest versions of Looper (2.0.0), Pipestat (0.12.0), Pypiper (piper == 0.14.3)
• update bowtie2, bedtools, fastqc, pigz versions.
• replace bamSitesToWig step with gtars uniwig.

v0.11.3

[0.11.3] -- 2024-06-05

Changed

• Pin Pipestat (pipestat==0.6.0), Looper (looper==1.6.0), and Pypiper (piper==0.14.0) versions to ensure compatibility

v0.11.2

[0.11.2] -- 2024-01-22

Fixed

• fix fastqc path Issue #268

v0.11.1

[0.11.1] -- 2024-01-17

Fixed

• changed PEPATACr.R to use lapply instead of sapply when converting yaml to data.table object

v0.11.0

[0.11.0] -- 2023-12-22

Fixed

• adjusted requirements and docs for Looper 1.6.0, Pipestat v0.6.0, and Pypiper 0.14.0

Changed

• pipeline uses MACS3 instead of MACS2
• output schema is now a pipestat compatible JSON Schema
• collator now outputs with record_identifier name summary

v0.10.5

• update looper requirements to v1.4.2

v0.10.4

• adjusted requirements for Looper (1.4.1 and above) and Eido (0.2.0 and above)

v0.10.3

See CHANGELOG.md for release notes.

v0.10.2

See CHANGELOG.md for release notes.

v0.10.1

See CHANGELOG.md for release notes.