Rank studies using new online learning framework #442
Workflow file for this run
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| name: checks | |
| on: | |
| push: | |
| branches: [ main, develop ] | |
| pull_request: # run on all PRs | |
| schedule: # run weekly | |
| - cron: "0 12 * * 0" | |
| # HACK: let's add fake colandr envvars so tests can run | |
| # TODO (burton): figure out a better way of configuring the app! | |
| env: | |
| COLANDR_DB_USER: "colandr_app" | |
| COLANDR_DB_PASSWORD: "password" | |
| COLANDR_DB_HOST: "localhost" | |
| COLANDR_DB_NAME: "colandr" | |
| COLANDR_DATABASE_URI: "postgresql+psycopg://colandr_app:password@localhost:5432/colandr" | |
| COLANDR_SECRET_KEY: "colandr_secret_key" | |
| COLANDR_APP_DIR: "/tmp" | |
| COLANDR_MAIL_USERNAME: "colandr_mail_username" | |
| COLANDR_MAIL_PASSWORD: "colandr_mail_password" | |
| jobs: | |
| tests: | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| python-version: ["3.10", "3.11"] | |
| # TODO: also run on macos-latest pending docker/colima issue | |
| os: [ubuntu-latest] | |
| services: | |
| # NOTE: these containers should match those in app's docker compose file | |
| colandr_db: | |
| image: "postgres:16" | |
| env: | |
| POSTGRES_USER: ${{ env.COLANDR_DB_USER }} | |
| POSTGRES_PASSWORD: ${{ env.COLANDR_DB_PASSWORD }} | |
| POSTGRES_DB: ${{ env.COLANDR_DB_NAME }} | |
| ports: | |
| - 5432:5432 | |
| options: >- | |
| --health-cmd pg_isready | |
| --health-interval 10s | |
| --health-timeout 5s | |
| --health-retries 5 | |
| colandr_broker: | |
| image: "redis:7.0" | |
| options: >- | |
| --health-cmd "redis-cli ping" | |
| --health-interval 10s | |
| --health-timeout 5s | |
| --health-retries 5 | |
| ports: | |
| - 6379:6379 | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| cache: "pip" | |
| cache-dependency-path: "pyproject.toml" | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip wheel | |
| python -m pip install -e '.[dev]' | |
| - name: Download language data | |
| run: | | |
| python -m textacy download lang_identifier --version 3.0 | |
| python -m spacy download en_core_web_md | |
| python -m spacy download es_core_news_md | |
| python -m spacy download fr_core_news_md | |
| - name: Test with pytest | |
| run: | | |
| python -m pytest tests --verbose | |
| lint: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: "3.11" | |
| cache: "pip" | |
| cache-dependency-path: "pyproject.toml" | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip wheel | |
| python -m pip install -e '.[dev]' | |
| - name: Check with ruff | |
| run: | | |
| python -m ruff check --output-format=github --exit-zero colandr | |
| types: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: "3.11" | |
| cache: "pip" | |
| cache-dependency-path: "pyproject.toml" | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip wheel | |
| python -m pip install -e '.[dev]' | |
| - name: Check types with mypy | |
| run: | | |
| python -m mypy --install-types --non-interactive colandr |