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reported on https://neurostars.org/t/problems-with-datalad-handbooks-containers-run/23011
(base) twutz@mate:~/vtwutz_ext/DataLad-101/midterm_project$ datalad containers-run -m "rerun analysis in container" \ > --container-name midterm-software \ > --input "input/iris.csv" \ > --output "prediction_report.csv" \ > --output "pairwise_relationships.png" \ > "python3 code/script.py" /home/twutz/miniconda3/lib/python3.9/site-packages/requests/__init__.py:102: RequestsDependencyWarning: urllib3 (1.26.8) or chardet (5.0.0)/charset_normalizer (2.0.4) doesn't match a supported version! warnings.warn("urllib3 ({}) or chardet ({})/charset_normalizer ({}) doesn't match a supported " [INFO ] Making sure inputs are available (this may take some time) unlock(ok): pairwise_relationships.png (file) unlock(ok): prediction_report.csv (file) [INFO ] == Command start (output follows) ===== usage: script.py [-h] data output_figure output_report script.py: error: the following arguments are required: data, output_figure, output_report [INFO ] == Command exit (modification check follows) ===== run(error): /home/twutz/vtwutz_ext/DataLad-101/midterm_project (dataset) [singularity exec .datalad/environments/m...] add(ok): pairwise_relationships.png (file) add(ok): prediction_report.csv (file) action summary: add (ok: 2) get (notneeded: 4) run (error: 1) save (notneeded: 2) unlock (ok: 2)
and indeed script used there from http://handbook.datalad.org/en/latest/basics/101-130-yodaproject.html#yoda-project seems to need positional arguments
The text was updated successfully, but these errors were encountered:
Sorry - for some reason this issue went right passed me. Will push a fix right away.
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BF: Fix script call, fixes #849
dea5583
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reported on https://neurostars.org/t/problems-with-datalad-handbooks-containers-run/23011
and indeed script used there from http://handbook.datalad.org/en/latest/basics/101-130-yodaproject.html#yoda-project seems to need positional arguments
The text was updated successfully, but these errors were encountered: