MoSeq2 Installation

Overview

Here you can find instructions on how to install MoSeq on your system. There are 2 routes of use/installation:

1. Docker (recommended route of installation)
2. Anaconda/conda (for those experienced with python or using computing clusters)

Docker

The Docker installation route is recommended if you are new to coding and using Conda. We provied a standardized and containerized version of the MoSeq2 package suite with a simplified installation and minimum setup. We recommend users with little experience with Python or programming in general to install MoSeq2 via Docker. See below for Docker installation instructions.

Follow the instructions for your operating system:

• Install MoSeq2 using Docker on Windows
• Install MoSeq2 using Docker on macOS

Anaconda/Conda

MoSeq2 is compatible with Windows, macOS, and many flavors of Linux. We've tested Debian, CentOS, and Ubuntu. Use other Linux distributions at your own risk.

If you are familiar with Conda and the terminal, and you enjoy more control over the packages and virtual environment, we recommend installing the MoSeq2 package suite with Conda. We recommend conda installation if you use high-performance computing clusters like SLRUM clusters. See below for conda installation instructions.

Follow the instructions for your operating system:

• Install MoSeq2 using Conda on Windows
• Install MoSeq2 using Conda on macOS
• Install MoSeq2 using Conda on Linux

What's next?

Once you've installed MoSeq2 package suite, navigate over to the Analysis Pipeline documentation to learn about extracting, modeling, analyzing, and visualizing the data.