Feat/publish action #58
Workflow file for this run
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| name: CI | |
| on: | |
| push: | |
| branches: [ main ] | |
| pull_request: | |
| branches: [ main ] | |
| release: | |
| types: [published] | |
| jobs: | |
| tests: | |
| runs-on: ubuntu-latest | |
| defaults: | |
| run: | |
| shell: bash -el {0} | |
| # For the slurm action to work, you have to supply a mysql service as defined below. | |
| services: | |
| mysql: | |
| image: mysql:8.0 | |
| env: | |
| MYSQL_ROOT_PASSWORD: root | |
| ports: | |
| - "8888:3306" | |
| options: --health-cmd="mysqladmin ping" --health-interval=10s --health-timeout=5s --health-retries=3 | |
| steps: | |
| - name: Set up SLURM | |
| uses: koesterlab/setup-slurm-action@v1 | |
| - name: Setup Mambaforge | |
| uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| miniforge-variant: Mambaforge | |
| miniforge-version: latest | |
| use-mamba: true | |
| activate-environment: slurm_sweeps | |
| - name: Check out repo | |
| uses: actions/checkout@v4 | |
| - name: Get Date for Conda cache | |
| id: get-date | |
| run: echo "today=$(/bin/date -u '+%Y%m%d')" >> $GITHUB_OUTPUT | |
| shell: bash | |
| - name: Cache Conda env | |
| uses: actions/cache@v3 | |
| env: | |
| CACHE_NUMBER: 0 | |
| with: | |
| path: ${{ env.CONDA }}/envs | |
| key: | |
| conda-${{ | |
| runner.os }}-${{ | |
| steps.get-date.outputs.today }}-${{ | |
| hashFiles('environment.yml') }}-${{ | |
| env.CACHE_NUMBER }} | |
| id: cache | |
| - name: Update environment | |
| run: mamba env update -n slurm_sweeps -f environment.yml | |
| if: steps.cache.outputs.cache-hit != 'true' | |
| - name: Running tests | |
| run: pytest --cov=slurm_sweeps | |
| - name: Upload coverage reports to Codecov | |
| uses: codecov/codecov-action@v3 | |
| env: | |
| CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }} | |
| release: | |
| runs-on: ubuntu-latest | |
| if: ${{ github.event_name == 'release' }} | |
| needs: tests | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Pythonh | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: '3.x' | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install build | |
| - name: Build package | |
| run: python -m build | |
| - name: Publish to TestPyPi | |
| uses: pypa/gh-action-pypi-publish@release/v1 | |
| with: | |
| password: ${{ secrets.TESTPYPI_API_TOKEN }} | |
| repository-url: https://test.pypi.org/legacy/ | |
| - name: Test installing | |
| run: | | |
| pip install --index-url https://test.pypi.org/simple --no-deps slurm-sweeps | |
| - name: Publish to PyPi | |
| uses: pypa/gh-action-pypi-publish@release/v1 | |
| with: | |
| password: ${{ secrets.PYPI_API_TOKEN }} |