test with python3.8 #62
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: CI | |
| on: | |
| push: | |
| branches: [ main ] | |
| pull_request: | |
| branches: [ main ] | |
| release: | |
| types: [published] | |
| jobs: | |
| tests: | |
| runs-on: ubuntu-latest | |
| defaults: | |
| run: | |
| shell: bash -el {0} | |
| # For the slurm action to work, you have to supply a mysql service as defined below. | |
| services: | |
| mysql: | |
| image: mysql:8.0 | |
| env: | |
| MYSQL_ROOT_PASSWORD: root | |
| ports: | |
| - "8888:3306" | |
| options: --health-cmd="mysqladmin ping" --health-interval=10s --health-timeout=5s --health-retries=3 | |
| steps: | |
| - name: Set up SLURM | |
| uses: koesterlab/setup-slurm-action@v1 | |
| - name: Setup Mambaforge | |
| uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| miniforge-variant: Mambaforge | |
| miniforge-version: latest | |
| use-mamba: true | |
| activate-environment: slurm_sweeps | |
| - name: Check out repo | |
| uses: actions/checkout@v4 | |
| - name: Get Date for Conda cache | |
| id: get-date | |
| run: echo "today=$(/bin/date -u '+%Y%m%d')" >> $GITHUB_OUTPUT | |
| shell: bash | |
| - name: Cache Conda env | |
| uses: actions/cache@v3 | |
| env: | |
| CACHE_NUMBER: 0 | |
| with: | |
| path: ${{ env.CONDA }}/envs | |
| key: | |
| conda-${{ | |
| runner.os }}-${{ | |
| steps.get-date.outputs.today }}-${{ | |
| hashFiles('environment.yml') }}-${{ | |
| env.CACHE_NUMBER }} | |
| id: cache | |
| - name: Update environment | |
| run: mamba env update -n slurm_sweeps -f environment.yml | |
| if: steps.cache.outputs.cache-hit != 'true' | |
| - name: Running tests | |
| run: pytest --cov=slurm_sweeps | |
| - name: Upload coverage reports to Codecov | |
| uses: codecov/codecov-action@v3 | |
| env: | |
| CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }} | |
| release: | |
| runs-on: ubuntu-latest | |
| if: ${{ github.event_name == 'release' }} | |
| needs: tests | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Pythonh | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: '3.x' | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install build | |
| - name: Build package | |
| run: python -m build | |
| - name: Publish to TestPyPi | |
| uses: pypa/gh-action-pypi-publish@release/v1 | |
| with: | |
| password: ${{ secrets.TESTPYPI_API_TOKEN }} | |
| repository-url: https://test.pypi.org/legacy/ | |
| - name: Test installing | |
| run: | | |
| pip install --index-url https://test.pypi.org/simple --no-deps slurm-sweeps | |
| - name: Publish to PyPi | |
| uses: pypa/gh-action-pypi-publish@release/v1 | |
| with: | |
| password: ${{ secrets.PYPI_API_TOKEN }} |