feature(add rlang #9): install R and R kernel for jupyter, just like …

…[r-notebook] docker image

oci/deno-jupyter/register.r.ikernel.previous.sh

@@ -0,0 +1,39 @@
+#!/bin/bash
+
+source ~/.bashrc
+
+# see https://irkernel.github.io/installation/
+
+echo 'options(repos = c(CRAN = "https://cloud.r-project.org"))' > ~/.Rprofile
+
+cat <<EOF >./register.to.jupyter.r
+install.packages('IRkernel')
+# + The kernel spec can be installed for the current user with the following line from R:
+# IRkernel::installspec()
+# + To install system-wide, set user to False in the installspec command:
+IRkernel::installspec(user = FALSE)
+EOF
+# ----
+# - unfortunately, it seems the @techrah/text-shortcuts extension is no longer available
+# jupyter labextension install @techrah/text-shortcuts
+# source ~/.bashrc && conda install -y -c conda-forge @techrah/text-shortcuts
+# conda install -y -c conda-forge @techrah/text-shortcuts
+# ---
+
+# --- 
+# the symlink so that anaconda thinks its him who installed jupyter...?
+# ln -s /usr/local/bin/jupyter ${HOME}/anaconda3/bin/jupyter
+# But we want sweeties, so...:
+# https://github.com/deathbeds/jupyterlab-deck
+# conda install -y -c conda-forge jupyterlab-deck # even with the above symlink, i don't think that any conda install command would change anything to the jupyter lab
+apt-get install -y git git-flow
+# --- about [libxrender1], see https://github.com/decoder-leco/poc-data-visualization/issues/9#issuecomment-1987203379
+# --- about [libfontconfig1-dev libharfbuzz-dev libfribidi-dev libfreetype6-dev libpng-dev libtiff5-dev libjpeg-dev], see https://github.com/decoder-leco/decoderleco_deces_europe_reloaded/pull/1#issuecomment-1987265383
+apt-get install -y libxrender1 libfontconfig1-dev libharfbuzz-dev libfribidi-dev libfreetype6-dev libpng-dev libtiff5-dev libjpeg-dev
+
+python -m pip install jupyterlab-deck jupyterlab-git
+
+R --version
+Rscript --version
+
+Rscript ./register.to.jupyter.r

oci/deno-jupyter/register.r.ikernel.sh

@@ -26,10 +26,60 @@ EOF
 # But we want sweeties, so...:
 # https://github.com/deathbeds/jupyterlab-deck
 # conda install -y -c conda-forge jupyterlab-deck # even with the above symlink, i don't think that any conda install command would change anything to the jupyter lab
-apt-get install -y git git-flow
+# apt-get install -y git git-flow
 # --- about [libxrender1], see https://github.com/decoder-leco/poc-data-visualization/issues/9#issuecomment-1987203379
-# --- about [libfontconfig1-dev libharfbuzz-dev libfribidi-dev], see https://github.com/decoder-leco/decoderleco_deces_europe_reloaded/pull/1#issuecomment-1987265383
-apt-get install -y libxrender1 libfontconfig1-dev libharfbuzz-dev libfribidi-dev
+# --- about [libfontconfig1-dev libharfbuzz-dev libfribidi-dev libfreetype6-dev libpng-dev libtiff5-dev libjpeg-dev], see https://github.com/decoder-leco/decoderleco_deces_europe_reloaded/pull/1#issuecomment-1987265383
+# apt-get install -y libxrender1 libfontconfig1-dev libharfbuzz-dev libfribidi-dev libfreetype6-dev libpng-dev libtiff5-dev libjpeg-dev
+
+# ----- 
+# --- just like [r-notebook] docker image
+
+# ---
+# - first uninstall conda packages previously installed:
+# conda install -y -c r r-irkernel
+# CONDA HELP: Use `--all` flag to remove all packages and the environment itself.
+conda remove -y --all
+
+export DESIRED_R_VERSION="4.3.3"
+apt-get update --yes && \
+    apt-get install --yes --no-install-recommends \
+    fonts-dejavu \
+    unixodbc \
+    unixodbc-dev \
+    r-cran-rodbc \
+    gfortran \
+    gcc && \
+    apt-get clean && rm -rf /var/lib/apt/lists/*
+
+conda install --yes \
+    "r-base=${DESIRED_R_VERSION}" \
+    'r-caret' \
+    'r-crayon' \
+    'r-devtools' \
+    'r-e1071' \
+    'r-forecast' \
+    'r-hexbin' \
+    'r-htmltools' \
+    'r-htmlwidgets' \
+    'r-irkernel' \
+    'r-nycflights13' \
+    'r-randomforest' \
+    'r-rcurl' \
+    'r-rmarkdown' \
+    'r-rodbc' \
+    'r-rsqlite' \
+    'r-shiny' \
+    'r-tidymodels' \
+    'r-tidyverse' \
+    'unixodbc' && \
+    conda clean --all -f -y && \
+    conda update --all -y
+
+#    mamba clean --all -f -y && \
+#    fix-permissions "${CONDA_DIR}" && \
+#    fix-permissions "/home/${NB_USER}
+# ---
+# -----
 
 python -m pip install jupyterlab-deck jupyterlab-git