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Support arbitrary types in partitioning columns (#885)
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rcaudy authored Jul 22, 2021
1 parent 6ab40bd commit 0ce46a7
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Showing 53 changed files with 1,069 additions and 387 deletions.
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Expand Up @@ -32,10 +32,12 @@
import io.deephaven.db.v2.sources.regioned.RegionedTableComponentFactoryImpl;
import io.deephaven.internal.log.LoggerFactory;
import io.deephaven.util.annotations.VisibleForTesting;
import io.deephaven.util.type.TypeUtils;
import org.apache.commons.lang3.mutable.MutableObject;
import org.jetbrains.annotations.NotNull;

import static io.deephaven.db.v2.parquet.ParquetTableWriter.PARQUET_FILE_EXTENSION;
import static io.deephaven.util.type.TypeUtils.getUnboxedTypeIfBoxed;

import java.io.File;
import java.io.IOException;
Expand Down Expand Up @@ -433,7 +435,8 @@ public static Table readMultiFileTable(
if (partitionValue == null) {
throw new IllegalArgumentException("First location key " + firstKey + " has null partition value at partition key " + partitionKey);
}
allColumns.add(ColumnDefinition.fromGenericType(partitionKey, partitionValue.getClass(), ColumnDefinition.COLUMNTYPE_PARTITIONING, null));
//noinspection unchecked
allColumns.add(ColumnDefinition.fromGenericType(partitionKey, getUnboxedTypeIfBoxed(partitionValue.getClass()), ColumnDefinition.COLUMNTYPE_PARTITIONING, null));
}
allColumns.addAll(schemaInfo.getFirst());
return readMultiFileTable(recordingLocationKeyFinder, schemaInfo.getSecond(), new TableDefinition(allColumns));
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16 changes: 10 additions & 6 deletions DB/src/main/java/io/deephaven/db/v2/PartitionAwareSourceTable.java
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Expand Up @@ -18,10 +18,11 @@
import io.deephaven.db.v2.select.*;
import io.deephaven.db.v2.sources.ArrayBackedColumnSource;
import io.deephaven.db.v2.sources.ColumnSource;
import io.deephaven.db.v2.sources.WritableSource;
import org.apache.commons.lang3.mutable.MutableLong;
import org.jetbrains.annotations.NotNull;
import org.jetbrains.annotations.Nullable;

import java.lang.reflect.Array;
import java.util.*;
import java.util.function.Function;
import java.util.stream.Collectors;
Expand Down Expand Up @@ -194,10 +195,13 @@ protected final Table redefine(TableDefinition newDefinitionExternal, TableDefin
@SuppressWarnings("unchecked")
private static <T> ColumnSource makePartitionSource(@NotNull final ColumnDefinition<T> columnDefinition, @NotNull final Collection<ImmutableTableLocationKey> locationKeys) {
final Class<T> dataType = columnDefinition.getDataType();
final T[] partitionValues = locationKeys.stream()
.map(lk -> (T) lk.getPartitionValue(columnDefinition.getName()))
.toArray(sz -> (T[]) Array.newInstance(dataType, sz));
return ArrayBackedColumnSource.getMemoryColumnSource(partitionValues, dataType, columnDefinition.getComponentType());
final String partitionKey = columnDefinition.getName();
final WritableSource<T> result = ArrayBackedColumnSource.getMemoryColumnSource(locationKeys.size(), dataType, null);
final MutableLong nextIndex = new MutableLong(0L);
locationKeys.stream()
.map(lk -> (T) lk.getPartitionValue(partitionKey))
.forEach((final T partitionValue) -> result.set(nextIndex.getAndIncrement(), partitionValue));
return result;
}

@Override
Expand Down Expand Up @@ -261,7 +265,7 @@ public final Table where(SelectFilter... filters) {
return deferredViewTable;
}

SelectFilter[] partitionFilterArray = partitionFilters.toArray(new SelectFilter[partitionFilters.size()]);
SelectFilter[] partitionFilterArray = partitionFilters.toArray(SelectFilter.ZERO_LENGTH_SELECT_FILTER_ARRAY);
final String filteredTableDescription = "getFilteredTable(" + Arrays.toString(partitionFilterArray) + ")";
SourceTable filteredTable = QueryPerformanceRecorder.withNugget(filteredTableDescription, () -> getFilteredTable(partitionFilterArray));

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Expand Up @@ -23,5 +23,5 @@ public interface TableLocationFactory<TK extends TableKey, TLK extends TableLoca
* {@link TableLocationProvider#supportsSubscriptions() supports subscriptions}
* @return A new or cached {@link TableLocation} identified by the supplied {@link TableKey} and {@link TableLocationKey}
*/
TableLocation makeLocation(@NotNull final TK tableKey, @NotNull TLK locationKey, @Nullable TableDataRefreshService refreshService);
TableLocation makeLocation(@NotNull TK tableKey, @NotNull TLK locationKey, @Nullable TableDataRefreshService refreshService);
}
Original file line number Diff line number Diff line change
Expand Up @@ -78,7 +78,7 @@ public final void findKeys(@NotNull final Consumer<TLK> locationKeyObserver) {
boolean needToUpdateInternalPartitionValue = true;
try (final DirectoryStream<Path> columnPartitionStream = Files.newDirectoryStream(internalPartition, Files::isDirectory)) {
for (final Path columnPartition : columnPartitionStream) {
partitions.put(columnPartitionKey, columnPartition.getFileName().toFile());
partitions.put(columnPartitionKey, columnPartition.getFileName().toString());
if (needToUpdateInternalPartitionValue) {
// Partition order dictates comparison priority, so we need to insert the internal partition after the column partition.
partitions.put(INTERNAL_PARTITION_KEY, internalPartitionValue);
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58 changes: 33 additions & 25 deletions DB/src/main/java/io/deephaven/db/v2/sources/chunk/page/Page.java
Original file line number Diff line number Diff line change
@@ -1,8 +1,8 @@
package io.deephaven.db.v2.sources.chunk.page;

import io.deephaven.db.util.LongSizedDataStructure;
import io.deephaven.db.v2.sources.chunk.Attributes.Any;
import io.deephaven.db.v2.sources.chunk.ChunkSource;
import io.deephaven.db.v2.sources.chunk.Attributes;
import io.deephaven.db.v2.sources.chunk.DefaultChunkSource;
import io.deephaven.db.v2.sources.chunk.WritableChunk;
import io.deephaven.db.v2.utils.OrderedKeys;
Expand All @@ -12,27 +12,27 @@
/**
* This provides the {@link ChunkSource} interface to a contiguous block of data from
* the range [{@link #firstRowOffset()},{@link #firstRowOffset()} + {@link #length()}).
*
* <p>
* Non overlapping pages can be collected together in a {@link PageStore}, which provides the {@link ChunkSource}
* interface to the collection of all of its Pages.
*
* <p>
* There are two distinct use cases/types of pages. The first use case are {@code Page}s which always have a
* length() > 0. These store length() values, which can be assessed via the {@link ChunkSource} methods.
* Valid {@link OrderedKeys} passed to those methods will have their offset in the range
* [firstRowOffset(), firstRowOffset() + length()). Passing OrderKeys with offsets outside of this range will have
* undefined results.
*
* <p>
* The second use case will always have length() == 0 and firstRowOffset() == 0. These represent "Null" regions
* which return a fixed value, typically a null value, for every {@link OrderedKeys} passed into the
* {@link ChunkSource} methods. In order to have this use case, override {@code length} and override {@code lastRow}
* as {@code maxRow}.
*
* <p>
* Though the {@link ChunkSource} methods ignore the non-offset portion of the rows in the {@link OrderedKeys},
* then can assume they are identical for all the passed in elements of the {@link OrderedKeys}. For instance,
* they can use the simple difference between the complete row value to determine a length.
*/

public interface Page<ATTR extends Attributes.Any> extends PagingChunkSource<ATTR> {
public interface Page<ATTR extends Any> extends PagingChunkSource<ATTR> {

/**
* @return the first row of this page, after applying the {@link #mask()}, which refers to the first row of this
Expand All @@ -45,7 +45,7 @@ public interface Page<ATTR extends Attributes.Any> extends PagingChunkSource<ATT
* @return the first row of this page, located in the same way as row.
*/
@FinalDefault
default long firstRow(long row) {
default long firstRow(final long row) {
final long m = mask();
return (row & ~m) | firstRowOffset();
}
Expand All @@ -54,7 +54,7 @@ default long firstRow(long row) {
* @param row Any row contained on this page.
* @return the last row of this page, located in the same way as row.
*/
default long lastRow(long row) {
default long lastRow(final long row) {
long l = length();
long m = mask();

Expand All @@ -74,15 +74,20 @@ default long getRowOffset(long row) {
return (row & mask()) - firstRowOffset();
}

interface WithDefaults<ATTR extends Attributes.Any> extends Page<ATTR>, DefaultChunkSource<ATTR> {
/**
* Helper defaults for general pages.
*/
interface WithDefaults<ATTR extends Any> extends Page<ATTR>, DefaultChunkSource<ATTR> {

@Override @FinalDefault
default void fillChunkAppend(@NotNull FillContext context, @NotNull WritableChunk<? super ATTR> destination, @NotNull OrderedKeys.Iterator orderedKeysIterator) {
fillChunkAppend(context, destination, orderedKeysIterator.getNextOrderedKeysThrough(maxRow(orderedKeysIterator.peekNextKey())));
@Override
@FinalDefault
default void fillChunkAppend(@NotNull final FillContext context, @NotNull final WritableChunk<? super ATTR> destination, @NotNull final OrderedKeys.Iterator orderedKeysIterator) {
fillChunkAppend(context, destination, orderedKeysIterator.getNextOrderedKeysThrough(maxRow(orderedKeysIterator.peekNextKey())));
}

@Override @FinalDefault
default void fillChunk(@NotNull FillContext context, @NotNull WritableChunk<? super ATTR> destination, @NotNull OrderedKeys orderedKeys) {
@Override
@FinalDefault
default void fillChunk(@NotNull final FillContext context, @NotNull final WritableChunk<? super ATTR> destination, @NotNull final OrderedKeys orderedKeys) {
destination.setSize(0);
fillChunkAppend(context, destination, orderedKeys);
}
Expand All @@ -95,29 +100,32 @@ default void fillChunk(@NotNull FillContext context, @NotNull WritableChunk<? su
}

/**
* This has helper defaults for columns that just represent a repeating value (such as null or partition columns).
* Helper defaults for pages that represent a repeating value, e.g. null or partitioning column regions.
*/
interface WithDefaultsForRepeatingValues<ATTR extends Any> extends Page<ATTR>, DefaultChunkSource<ATTR> {

interface WithDefaultsForRepeatingValues<ATTR extends Attributes.Any> extends Page<ATTR>, DefaultChunkSource<ATTR> {

@Override @FinalDefault
@Override
@FinalDefault
default long length() {
return 0;
}

@Override @FinalDefault
default long lastRow(long row) {
@Override
@FinalDefault
default long lastRow(final long row) {
return maxRow(row);
}

@Override @FinalDefault
default void fillChunkAppend(@NotNull FillContext context, @NotNull WritableChunk<? super ATTR> destination, @NotNull OrderedKeys.Iterator orderedKeysIterator) {
@Override
@FinalDefault
default void fillChunkAppend(@NotNull final FillContext context, @NotNull final WritableChunk<? super ATTR> destination, @NotNull final OrderedKeys.Iterator orderedKeysIterator) {
fillChunkAppend(context, destination, LongSizedDataStructure.intSize("fillChunkAppend",
orderedKeysIterator.advanceAndGetPositionDistance(maxRow(orderedKeysIterator.peekNextKey()))));
orderedKeysIterator.advanceAndGetPositionDistance(maxRow(orderedKeysIterator.peekNextKey()))));
}

@Override @FinalDefault
default void fillChunk(@NotNull FillContext context, @NotNull WritableChunk<? super ATTR> destination, @NotNull OrderedKeys orderedKeys) {
@Override
@FinalDefault
default void fillChunk(@NotNull final FillContext context, @NotNull final WritableChunk<? super ATTR> destination, @NotNull final OrderedKeys orderedKeys) {
destination.setSize(0);
fillChunkAppend(context, destination, orderedKeys.intSize());
}
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Original file line number Diff line number Diff line change
@@ -1,37 +1,40 @@
package io.deephaven.db.v2.sources.regioned;

import io.deephaven.db.v2.sources.Releasable;
import io.deephaven.db.v2.sources.chunk.Attributes;
import io.deephaven.db.v2.sources.chunk.Attributes.Any;
import io.deephaven.db.v2.sources.chunk.WritableChunk;
import io.deephaven.db.v2.sources.chunk.page.Page;
import io.deephaven.util.annotations.FinalDefault;
import org.jetbrains.annotations.NotNull;

public interface ColumnRegion<ATTR extends Attributes.Any> extends Page<ATTR>, Releasable {
public interface ColumnRegion<ATTR extends Any> extends Page<ATTR>, Releasable {

long REGION_MASK = RegionedPageStore.REGION_MASK;

@Override @FinalDefault
@Override
@FinalDefault
default long mask() {
return REGION_MASK;
}

@Override @FinalDefault
@Override
@FinalDefault
default long firstRowOffset() {
return 0;
}

abstract class Null<ATTR extends Attributes.Any>
abstract class Null<ATTR extends Any>
implements ColumnRegion<ATTR>, WithDefaultsForRepeatingValues<ATTR> {

Null() {}
Null() {
}

@Override
public void fillChunkAppend(@NotNull FillContext context, @NotNull WritableChunk<? super ATTR> destination, int length) {
int offset = destination.size();
public void fillChunkAppend(@NotNull final FillContext context, @NotNull final WritableChunk<? super ATTR> destination, final int length) {
final int offset = destination.size();

destination.fillWithNullValue(offset, length);
destination.setSize(offset + length);
}
}

}
Original file line number Diff line number Diff line change
@@ -1,15 +1,16 @@
package io.deephaven.db.v2.sources.regioned;

import io.deephaven.db.v2.sources.chunk.Attributes.Any;
import io.deephaven.db.v2.sources.chunk.WritableChunk;
import io.deephaven.util.QueryConstants;
import io.deephaven.db.v2.sources.chunk.Attributes;
import org.jetbrains.annotations.NotNull;

import java.util.Arrays;

/**
* Column region interface for regions that support fetching primitive bytes.
*/
public interface ColumnRegionByte<ATTR extends Attributes.Any> extends ColumnRegion<ATTR> {
public interface ColumnRegionByte<ATTR extends Any> extends ColumnRegion<ATTR> {

/**
* Get a single byte from this region.
Expand All @@ -27,7 +28,7 @@ public interface ColumnRegionByte<ATTR extends Attributes.Any> extends ColumnReg
* @param elementIndex Element (byte) index in the table's address space
* @return The byte value at the specified element (byte) index
*/
default byte getByte(@NotNull FillContext context, long elementIndex) {
default byte getByte(@NotNull final FillContext context, final long elementIndex) {
return getByte(elementIndex);
}

Expand All @@ -52,26 +53,54 @@ default Class<?> getNativeType() {
return byte.class;
}

static <ATTR extends Attributes.Any> ColumnRegionByte.Null<ATTR> createNull() {
static <ATTR extends Any> ColumnRegionByte.Null<ATTR> createNull() {
//noinspection unchecked
return Null.INSTANCE;
}

final class Null<ATTR extends Attributes.Any> extends ColumnRegion.Null<ATTR> implements ColumnRegionByte<ATTR> {
final class Null<ATTR extends Any> extends ColumnRegion.Null<ATTR> implements ColumnRegionByte<ATTR> {
@SuppressWarnings("rawtypes")
private static final ColumnRegionByte.Null INSTANCE = new ColumnRegionByte.Null();

private Null() {}
private Null() {
}

@Override
public byte getByte(long elementIndex) {
public byte getByte(final long elementIndex) {
return QueryConstants.NULL_BYTE;
}

@Override
public byte[] getBytes(long firstElementIndex, @NotNull byte[] destination, int destinationOffset, int length) {
public byte[] getBytes(final long firstElementIndex, @NotNull final byte[] destination, final int destinationOffset, final int length) {
Arrays.fill(destination, destinationOffset, destinationOffset + length, QueryConstants.NULL_BYTE);
return destination;
}
}

final class Constant<ATTR extends Any> implements ColumnRegionByte<ATTR>, WithDefaultsForRepeatingValues<ATTR> {

private final byte value;

public Constant(final byte value) {
this.value = value;
}

@Override
public byte getByte(final long elementIndex) {
return value;
}

@Override
public void fillChunkAppend(@NotNull final FillContext context, @NotNull final WritableChunk<? super ATTR> destination, final int length) {
final int offset = destination.size();
destination.asWritableByteChunk().fillWithValue(offset, length, value);
destination.setSize(offset + length);
}

@Override
public byte[] getBytes(final long firstElementIndex, @NotNull final byte[] destination, final int destinationOffset, final int length) {
Arrays.fill(destination, destinationOffset, destinationOffset + length, value);
return destination;
}
}
}
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