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Update manifest.bioimageio_dij_install_model.yaml
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esgomezm authored Dec 4, 2023
1 parent 2a5519b commit 7b81b8e
Showing 1 changed file with 10 additions and 21 deletions.
31 changes: 10 additions & 21 deletions manifest.bioimageio_dij_install_model.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -32,35 +32,24 @@ config:

collection:
# ==================applications====================
- id: deepimagej-web
- id: deepimagej
name: deepImageJ
description: "DeepImageJ is a user-friendly plugin that enables the use of pre-trained deep learning models in ImageJ and Fiji."
type: application
name: DeepImageJ
description: DeepImageJ is a user-friendly plugin that enables the use of pre-trained deep learning models in ImageJ and Fiji.
source: https://deepimagej.github.io/deepimagej/index.html
cite:
- text: "Gómez-de-Mariscal, E., García-López-de-Haro, C., Ouyang, W., Donati, L., Lundberg E., Unser, M., Muñoz-Barrutia, A. and Sage, D. DeepImageJ: A user-friendly plugin to run deep learning models in ImageJ, BioRxiv, 2019"
doi: https://doi.org/10.1101/799270
- text: "Gómez-de-Mariscal, E., García-López-de-Haro, C., Ouyang, W., Donati, L., Lundberg E., Unser, M., Muñoz-Barrutia, A. and Sage, D. DeepImageJ: A user-friendly plugin to run deep learning models in ImageJ, BioRxiv, 2019"
doi: https://doi.org/10.1101/799270
authors:
- name: DeepImageJ
- name: deepImageJ
affiliation: EPFL, UC3M
source: https://raw.githubusercontent.com/deepimagej/models/master/src/deepimagej-app.imjoy.html
tags: [software, bioengine, deepimagej]
icon: https://raw.githubusercontent.com/deepimagej/models/master/logos/icon.png
documentation: https://deepimagej.github.io/deepimagej/index.html
documentation: https://deepimagej.github.io/
git_repo: https://github.com/deepimagej/deepimagej-plugin
passive: true
tags:
- deepimagej
- software
config:
supported_weight_formats: ["tensorflow_saved_model_bundle"]
supported_weight_formats: ["tensorflow_saved_model_bundle", "torchscript"]

- id: deepimagej
name: deepimagej
description: "Export BioImage.IO model packages for deepImageJ from a model description file"
type: application
source: https://raw.githubusercontent.com/deepimagej/models/master/src/deepimagej-app.imjoy.html
tags: [software, bioengine]
icon: https://raw.githubusercontent.com/deepimagej/models/master/logos/icon.png

- id: unet-pancreaticcellsegmentation
type: application
name: 2D U-Net for binary segmentation
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