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append to out_file when LAMMPS restarts #640

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May 18, 2021
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@njzjz njzjz commented May 18, 2021

This ensures the out file will not be override when LAMMPS restarts.
This commit may be conflicted with #392. Commit
5597ea2 should be dropped.

Resolves #623.

This ensures the out file will not be override when LAMMPS restarts.
This commit may be conflicted with deepmodeling#392. Commit
@5597ea2b49f96e99a52a9779b04b6c12e5a79a04 should be dropped.
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codecov-commenter commented May 18, 2021

Codecov Report

Merging #640 (eca960d) into devel (98c3ba1) will not change coverage.
The diff coverage is n/a.

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@@           Coverage Diff           @@
##            devel     #640   +/-   ##
=======================================
  Coverage   74.37%   74.37%           
=======================================
  Files          81       81           
  Lines        6399     6399           
=======================================
  Hits         4759     4759           
  Misses       1640     1640           

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Could you patch this bug fixing to the master branch?

@amcadmus amcadmus merged commit 363f9ba into deepmodeling:devel May 18, 2021
@njzjz njzjz linked an issue May 18, 2021 that may be closed by this pull request
This was referenced Jun 10, 2021
denghuilu added a commit to denghuilu/deepmd-kit that referenced this pull request Jun 15, 2021
add Important hint for getting-started.md

Update argcheck.py

add Important hint for variables

Update getting-started.md

check validity of data systems. print help message

add Important hint at getting-start.md (deepmodeling#622)

* add Important hint for getting-started.md

* add hint for some parameters

* add Important hint for variables

* Update argcheck.py

* Update getting-started.md

add doc of type embedding (deepmodeling#625)

Optimized mkindex function in doc/conf.py and added two files in troubleshooting. (deepmodeling#619)

support MPI and other atom_styles for LAMMPS atomic keyword (deepmodeling#628)

* support MPI and other atom_styles for LAMMPS atomic keyword

fix problems left in #44

* move out_each codes together

* indent the code

fix spell mistake (deepmodeling#638)

Atention -> Attention

Readme and Examples for Tensor mode (deepmodeling#632)

* Complete modification of tensor training, support combination of system with global/local label, and support polar label normalization to speed up training. Examples and documentation not added yet

* modify dipole json to pass ut test

* change json file (second time) to pass ut test

* modify test_data_modifier_shuffle.py file to fit new args rule

* modify data_modifier_shuffle: from dipole.npy to atomic_dipole.npy

* modify the name of pref_weight to pref and pref_atomic_weight to pref_atomic, plus some implementation mentioned by Han Wang in May 7th's email

* fix a bug occuring in ut test

* fix args of polar_se_a.json, to pass ut test

* change args: from loss_type to type, so that the args will be the same as ener mode, and will not cause conflict

* add examples and readme for tensor fitting mode in May 14

* change readmd content of tensor fit

* change the file name of readme file of tensor fitting

* Update train-fitting-tensor.md

* Update train-fitting-tensor.md

* Update train-fitting-tensor.md

* change the explanation of why some of lcurve.out is 0

* Update train-fitting-tensor.md

* Update train-fitting-tensor.md

append to out_file when LAMMPS restarts (deepmodeling#640)

This ensures the out file will not be override when LAMMPS restarts.
This commit may be conflicted with deepmodeling#392. Commit
@5597ea2b49f96e99a52a9779b04b6c12e5a79a04 should be dropped.

add an example of C++ inference to doc (deepmodeling#652)

* add an example of C++ inference to doc

* fix broken link

Add instructions for i-PI (deepmodeling#660)

* Add instructions for i-PI

* Update doc/getting-started.md

Co-authored-by: Jinzhe Zeng <jinzhe.zeng@rutgers.edu>

Co-authored-by: tuoping <abby@DESKTOP-LV5KL0D.localdomain>
Co-authored-by: Jinzhe Zeng <jinzhe.zeng@rutgers.edu>

Added doc for netsize setting, num_nodes specification, and sel setting in doc/troubleshooting/ (deepmodeling#657)

fix issue 668 (deepmodeling#680)

* fix bug of issue 668
@njzjz njzjz mentioned this pull request Aug 12, 2021
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@njzjz njzjz deleted the restart branch August 12, 2021 22:23
gzq942560379 pushed a commit to HPC-AI-Team/deepmd-kit that referenced this pull request Sep 1, 2021
This ensures the out file will not be override when LAMMPS restarts.
This commit may be conflicted with deepmodeling#392. Commit
@5597ea2b49f96e99a52a9779b04b6c12e5a79a04 should be dropped.
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[Feature Request] Append to model_devi.out if restart
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