bug_fix | init_bulk | stages 3 | lost the last pert-dir in stages 2 #530
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pert_numb = jdata['pert_numb']
stages 2 pert makes 000000+pert_numb structures (dirs), pert_numb + 1 in total
stages 3 was copying those in range(pert_numb), the first pert_numb structures(dir), lost the last one.