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multiBamSummary with --outRawCounts in python 3 dies #416

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dpryan79 opened this issue Sep 2, 2016 · 3 comments
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multiBamSummary with --outRawCounts in python 3 dies #416

dpryan79 opened this issue Sep 2, 2016 · 3 comments
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dpryan79 commented Sep 2, 2016

It turns out that --outRawCounts is using argparse to open the output file. The resulting file pointer is then being passed around. That works in python2, but not python3.
@dpryan79 dpryan79 added the bug label Sep 2, 2016
@dpryan79 dpryan79 self-assigned this Sep 2, 2016
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dpryan79 commented Sep 2, 2016

Presumably this is like #407, where multiBigwigSummary is similarly affected.

dpryan79 added a commit that referenced this issue Sep 2, 2016
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Fix #416
76b7970
dpryan79 added a commit that referenced this issue Sep 2, 2016
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Fix #416, which is like #407 but python3-specific
9516afb
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dpryan79 commented Sep 2, 2016

Yup, though at least the fix was easy.

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dpryan79 commented Sep 2, 2016

Gah, plotCoverage is affected too!

@dpryan79 dpryan79 closed this as completed Sep 2, 2016
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