-
Notifications
You must be signed in to change notification settings - Fork 212
New issue
Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.
By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.
Already on GitHub? Sign in to your account
Add --fixedStep option for bigwigCompare #1028
Conversation
There was a problem hiding this comment.
Choose a reason for hiding this comment
The reason will be displayed to describe this comment to others. Learn more.
Thanks a lot @icebert!
@@ -93,6 +93,11 @@ def parse_arguments(args=None): | |||
'zeros may be wrong and this option should be used ', | |||
action='store_true') | |||
|
|||
parser.add_argument('--fixedStep', | |||
help='Output in fixed step of bin size (as specified by --binSize), not merging ' |
There was a problem hiding this comment.
Choose a reason for hiding this comment
The reason will be displayed to describe this comment to others. Learn more.
If anyone has a better phrasing here that would be great. I think the PR is fine but the sentences is a bit confusing for me.
There was a problem hiding this comment.
Choose a reason for hiding this comment
The reason will be displayed to describe this comment to others. Learn more.
@WardDeb any idea?
There was a problem hiding this comment.
Choose a reason for hiding this comment
The reason will be displayed to describe this comment to others. Learn more.
Agreed the wording is a bit confusing.
Perhaps:
'Write out all bins (of size --binSize) instead of merging neighbouring bins with equal values.' ?
There was a problem hiding this comment.
Choose a reason for hiding this comment
The reason will be displayed to describe this comment to others. Learn more.
I'll take it along in develop for now and will make the change afterwards.
Welcome to deepTools GitHub repository! Please check the following regarding
your pull request :