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Add --fixedStep option for bigwigCompare #1028

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merged 3 commits into from
May 12, 2023
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icebert
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@icebert icebert commented Dec 10, 2020

Welcome to deepTools GitHub repository! Please check the following regarding
your pull request :

  • [ Y] Does the PR contain new feature?
  • [ N] Does the PR contain bugfix?
  • [ Y] Does the PR contain documentation changes?
  • [N ] Does the PR contain changes to the galaxy wrapper?

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Thanks a lot @icebert!

@@ -93,6 +93,11 @@ def parse_arguments(args=None):
'zeros may be wrong and this option should be used ',
action='store_true')

parser.add_argument('--fixedStep',
help='Output in fixed step of bin size (as specified by --binSize), not merging '
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If anyone has a better phrasing here that would be great. I think the PR is fine but the sentences is a bit confusing for me.

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@WardDeb any idea?

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Agreed the wording is a bit confusing.
Perhaps:
'Write out all bins (of size --binSize) instead of merging neighbouring bins with equal values.' ?

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I'll take it along in develop for now and will make the change afterwards.

@WardDeb WardDeb changed the base branch from master to dev_wd May 12, 2023 11:12
@WardDeb WardDeb changed the base branch from dev_wd to develop May 12, 2023 11:12
@WardDeb WardDeb merged commit 723fcd7 into deeptools:develop May 12, 2023
@WardDeb WardDeb mentioned this pull request May 12, 2023
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3 participants