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Fix galaxy tests #1186

Merged
merged 6 commits into from
Jan 30, 2023
Merged

Fix galaxy tests #1186

merged 6 commits into from
Jan 30, 2023

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lldelisle
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@lldelisle lldelisle changed the title [WIP] Fix galaxy tests Fix galaxy tests Jan 20, 2023
@lldelisle
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@adRn-s I managed to fix the galaxy tests. I also changed the CI so we can access the test report. The only thing I don't like is: my conda update samtools but this is due to the fact that the ci-actions belong to dpryan79 so it is not easy to change.

@adRn-s adRn-s merged commit f949110 into deeptools:develop Jan 30, 2023
adRn-s added a commit that referenced this pull request Feb 3, 2023
* Fix label options

* add pool

* trigger test

* new azure syntax?

* run also on PR

* fix #1159

* fixes #1172

* Addressing #1181

* Bigwig average (#1169)

* Fixes #1159

* Revert "dendogram of plotCorrelation now matches each cell correctly"

* add bigwigAverage

* linting

* remove forgotten prints

* make bigwigAverage executable

* fix galaxy tests

Co-authored-by: A.s <62971995+adRn-s@users.noreply.github.com>
Co-authored-by: LeilyR <25766687+LeilyR@users.noreply.github.com>

* Addresses #1183

* Fix galaxy tests (#1186)

* upload artifact

* allow 1 or 2 lines diff for bowtie2 program

* change github action to get artifacts

* fix plotPCA

* try to fix old samtools installed

* add forgotten channels

---------

Co-authored-by: Cristóbal Gallardo <gallardo@informatik.uni-freiburg.de>
Co-authored-by: Björn Grüning <bjoern@gruenings.eu>
Co-authored-by: LeilyR <25766687+LeilyR@users.noreply.github.com>
Co-authored-by: Lucille Delisle <lucille.delisle@epfl.ch>
Co-authored-by: adRn-s <salatino@omics.dev>
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2 participants