Resolving memory issues in cov calc #1347
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… / bw output. Made file writer general, streaming generation moved to bamCompare / bamCoverage.
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This PR gets rid of the memory issues (keeping all stats in memory) for 'large' genomes. The tmpfile framework is reinstated, but per region, not per chunk.
computeMatrix functionality is just commented out for now, needs to be tackled later on.